Result of FASTA (omim) for
pF1KSDA0032
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0032, 1050 aa
1>>>pF1KSDA0032 1050 - 1050 aa - 1050 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3237+/-0.000517; mu= 21.7512+/- 0.032
mean_var=75.5594+/-15.756, 0's: 0 Z-trim(108.2): 347 B-trim: 393 in 1/50
Lambda= 0.147547
statistics sampled from 15954 (16311) to 15954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.532), E-opt: 0.2 (0.191), width: 16
Scan time: 11.930
The best scores are: opt bits E(85289)
NP_055421 (OMIM: 605200) probable E3 ubiquitin-pro (1050) 7061 1513.8 0
XP_005263384 (OMIM: 605200) PREDICTED: probable E3 (1050) 7061 1513.8 0
XP_016864295 (OMIM: 605200) PREDICTED: probable E3 (1042) 6985 1497.6 0
XP_005263386 (OMIM: 605200) PREDICTED: probable E3 (1042) 6985 1497.6 0
NP_001258531 (OMIM: 605200) probable E3 ubiquitin- ( 932) 6231 1337.1 0
XP_016864296 (OMIM: 605200) PREDICTED: probable E3 ( 924) 6155 1320.9 0
XP_005263388 (OMIM: 605200) PREDICTED: probable E3 ( 903) 5982 1284.1 0
XP_005263389 (OMIM: 605200) PREDICTED: probable E3 ( 896) 5976 1282.8 0
XP_005263387 (OMIM: 605200) PREDICTED: probable E3 ( 993) 4601 990.2 0
NP_071362 (OMIM: 609248) probable E3 ubiquitin-pro (1057) 3972 856.3 0
NP_056416 (OMIM: 609248) probable E3 ubiquitin-pro (1049) 3969 855.6 0
XP_016864297 (OMIM: 605200) PREDICTED: probable E3 ( 580) 3837 827.4 0
XP_011537898 (OMIM: 609248) PREDICTED: probable E3 ( 987) 3705 799.4 0
XP_011537897 (OMIM: 609248) PREDICTED: probable E3 (1011) 3499 755.6 3.2e-217
XP_011537896 (OMIM: 609248) PREDICTED: probable E3 (1011) 3499 755.6 3.2e-217
XP_011537894 (OMIM: 609248) PREDICTED: probable E3 (1081) 3497 755.2 4.5e-217
XP_011537895 (OMIM: 609248) PREDICTED: probable E3 (1073) 3483 752.2 3.5e-216
XP_011530699 (OMIM: 605200) PREDICTED: probable E3 ( 494) 3256 703.6 6.8e-202
NP_001265115 (OMIM: 609248) probable E3 ubiquitin- ( 794) 2947 638.0 6.2e-182
NP_001265114 (OMIM: 609248) probable E3 ubiquitin- ( 979) 2729 591.7 6.8e-168
NP_001305434 (OMIM: 605200) probable E3 ubiquitin- ( 368) 2466 535.4 2.3e-151
XP_011537899 (OMIM: 609248) PREDICTED: probable E3 ( 960) 1893 413.7 2.5e-114
XP_016871530 (OMIM: 609248) PREDICTED: probable E3 ( 936) 1727 378.4 1.1e-103
XP_016863822 (OMIM: 609249) PREDICTED: probable E3 ( 614) 1282 283.5 2.5e-75
NP_001158608 (OMIM: 609249) probable E3 ubiquitin- ( 986) 1024 228.7 1.2e-58
NP_060382 (OMIM: 609249) probable E3 ubiquitin-pro (1022) 1024 228.7 1.3e-58
XP_016878044 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
XP_016878041 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
XP_016878043 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
XP_006720739 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
XP_005268324 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
NP_570853 (OMIM: 105830,601623) ubiquitin-protein ( 852) 960 215.1 1.4e-54
XP_005268328 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
XP_006720738 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
XP_016878040 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
XP_016878042 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
XP_005268326 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
XP_005268325 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
XP_005268327 (OMIM: 105830,601623) PREDICTED: ubiq ( 852) 960 215.1 1.4e-54
NP_570854 (OMIM: 105830,601623) ubiquitin-protein ( 872) 960 215.1 1.4e-54
XP_016878038 (OMIM: 105830,601623) PREDICTED: ubiq ( 872) 960 215.1 1.4e-54
XP_016878037 (OMIM: 105830,601623) PREDICTED: ubiq ( 872) 960 215.1 1.4e-54
XP_016878036 (OMIM: 105830,601623) PREDICTED: ubiq ( 872) 960 215.1 1.4e-54
XP_016878039 (OMIM: 105830,601623) PREDICTED: ubiq ( 872) 960 215.1 1.4e-54
XP_016878034 (OMIM: 105830,601623) PREDICTED: ubiq ( 875) 960 215.1 1.4e-54
NP_000453 (OMIM: 105830,601623) ubiquitin-protein ( 875) 960 215.1 1.4e-54
XP_016878035 (OMIM: 105830,601623) PREDICTED: ubiq ( 875) 960 215.1 1.4e-54
XP_016878033 (OMIM: 105830,601623) PREDICTED: ubiq ( 875) 960 215.1 1.4e-54
XP_011520297 (OMIM: 105830,601623) PREDICTED: ubiq ( 875) 960 215.1 1.4e-54
XP_011520296 (OMIM: 105830,601623) PREDICTED: ubiq ( 875) 960 215.1 1.4e-54
>>NP_055421 (OMIM: 605200) probable E3 ubiquitin-protein (1050 aa)
initn: 7061 init1: 7061 opt: 7061 Z-score: 8118.4 bits: 1513.8 E(85289): 0
Smith-Waterman score: 7061; 100.0% identity (100.0% similar) in 1050 aa overlap (1-1050:1-1050)
10 20 30 40 50 60
pF1KSD MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYN
970 980 990 1000 1010 1020
1030 1040 1050
pF1KSD LLDLPKYSSKEILSARLTQALDNYEGFSLA
::::::::::::::::::::::::::::::
NP_055 LLDLPKYSSKEILSARLTQALDNYEGFSLA
1030 1040 1050
>>XP_005263384 (OMIM: 605200) PREDICTED: probable E3 ubi (1050 aa)
initn: 7061 init1: 7061 opt: 7061 Z-score: 8118.4 bits: 1513.8 E(85289): 0
Smith-Waterman score: 7061; 100.0% identity (100.0% similar) in 1050 aa overlap (1-1050:1-1050)
10 20 30 40 50 60
pF1KSD MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYN
970 980 990 1000 1010 1020
1030 1040 1050
pF1KSD LLDLPKYSSKEILSARLTQALDNYEGFSLA
::::::::::::::::::::::::::::::
XP_005 LLDLPKYSSKEILSARLTQALDNYEGFSLA
1030 1040 1050
>>XP_016864295 (OMIM: 605200) PREDICTED: probable E3 ubi (1042 aa)
initn: 6997 init1: 4327 opt: 6985 Z-score: 8031.0 bits: 1497.6 E(85289): 0
Smith-Waterman score: 6985; 99.2% identity (99.2% similar) in 1050 aa overlap (1-1050:1-1042)
10 20 30 40 50 60
pF1KSD MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
::::::::::::::::::::::::::::::::::::: :::::::::::::::
XP_016 NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGM--------DTVTLCSYPFIFDAQ
610 620 630 640 650
670 680 690 700 710 720
pF1KSD AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
660 670 680 690 700 710
730 740 750 760 770 780
pF1KSD IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
720 730 740 750 760 770
790 800 810 820 830 840
pF1KSD CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
780 790 800 810 820 830
850 860 870 880 890 900
pF1KSD LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
840 850 860 870 880 890
910 920 930 940 950 960
pF1KSD SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
900 910 920 930 940 950
970 980 990 1000 1010 1020
pF1KSD TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYN
960 970 980 990 1000 1010
1030 1040 1050
pF1KSD LLDLPKYSSKEILSARLTQALDNYEGFSLA
::::::::::::::::::::::::::::::
XP_016 LLDLPKYSSKEILSARLTQALDNYEGFSLA
1020 1030 1040
>>XP_005263386 (OMIM: 605200) PREDICTED: probable E3 ubi (1042 aa)
initn: 6997 init1: 4327 opt: 6985 Z-score: 8031.0 bits: 1497.6 E(85289): 0
Smith-Waterman score: 6985; 99.2% identity (99.2% similar) in 1050 aa overlap (1-1050:1-1042)
10 20 30 40 50 60
pF1KSD MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
::::::::::::::::::::::::::::::::::::: :::::::::::::::
XP_005 NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGM--------DTVTLCSYPFIFDAQ
610 620 630 640 650
670 680 690 700 710 720
pF1KSD AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
660 670 680 690 700 710
730 740 750 760 770 780
pF1KSD IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
720 730 740 750 760 770
790 800 810 820 830 840
pF1KSD CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
780 790 800 810 820 830
850 860 870 880 890 900
pF1KSD LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
840 850 860 870 880 890
910 920 930 940 950 960
pF1KSD SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
900 910 920 930 940 950
970 980 990 1000 1010 1020
pF1KSD TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYN
960 970 980 990 1000 1010
1030 1040 1050
pF1KSD LLDLPKYSSKEILSARLTQALDNYEGFSLA
::::::::::::::::::::::::::::::
XP_005 LLDLPKYSSKEILSARLTQALDNYEGFSLA
1020 1030 1040
>>NP_001258531 (OMIM: 605200) probable E3 ubiquitin-prot (932 aa)
initn: 6231 init1: 6231 opt: 6231 Z-score: 7164.3 bits: 1337.1 E(85289): 0
Smith-Waterman score: 6231; 100.0% identity (100.0% similar) in 932 aa overlap (119-1050:1-932)
90 100 110 120 130 140
pF1KSD VACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWH
::::::::::::::::::::::::::::::
NP_001 MTTEDSVAVPRLIQKLNQQTILQVSCGNWH
10 20 30
150 160 170 180 190 200
pF1KSD CLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLS
40 50 60 70 80 90
210 220 230 240 250 260
pF1KSD GAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGA
100 110 120 130 140 150
270 280 290 300 310 320
pF1KSD GSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG
160 170 180 190 200 210
330 340 350 360 370 380
pF1KSD TGHTCNVKCPSPVKGYWAAHSGQLSARADRFKYHIVKQIFSGGDQTFVLCSKYENYSPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGHTCNVKCPSPVKGYWAAHSGQLSARADRFKYHIVKQIFSGGDQTFVLCSKYENYSPAV
220 230 240 250 260 270
390 400 410 420 430 440
pF1KSD DFRTMNQAHYTSLINDETIAVWRQKLSEHNNANTINGVVQILSSAACWNGSFLEKKIDEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFRTMNQAHYTSLINDETIAVWRQKLSEHNNANTINGVVQILSSAACWNGSFLEKKIDEH
280 290 300 310 320 330
450 460 470 480 490 500
pF1KSD FKTSPKIPGIDLNSTRVLFEKLMNSQHSMILEQILNSFESCLIPQLSSSPPDVEAMRIYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKTSPKIPGIDLNSTRVLFEKLMNSQHSMILEQILNSFESCLIPQLSSSPPDVEAMRIYL
340 350 360 370 380 390
510 520 530 540 550 560
pF1KSD ILPEFPLLQDSKYYITLTIPLAMAILRLDTNPSKVLDNWWSQVCPKYFMKLVNLYKGAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILPEFPLLQDSKYYITLTIPLAMAILRLDTNPSKVLDNWWSQVCPKYFMKLVNLYKGAVL
400 410 420 430 440 450
570 580 590 600 610 620
pF1KSD YLLRGRKTFLIPVLFNNYITAALKLLEKLYKVNLKVKHVEYDTFYIPEISNLVDIQEDYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLLRGRKTFLIPVLFNNYITAALKLLEKLYKVNLKVKHVEYDTFYIPEISNLVDIQEDYL
460 470 480 490 500 510
630 640 650 660 670 680
pF1KSD MWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQAKTKMLQTDAELQMQVAVNGANLQNVFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQAKTKMLQTDAELQMQVAVNGANLQNVFM
520 530 540 550 560 570
690 700 710 720 730 740
pF1KSD LLTLEPLLARSPFLVLHVRRNNLVGDALRELSIHSDIDLKKPLKVIFDGEEAVDAGGVTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLTLEPLLARSPFLVLHVRRNNLVGDALRELSIHSDIDLKKPLKVIFDGEEAVDAGGVTK
580 590 600 610 620 630
750 760 770 780 790 800
pF1KSD EFFLLLLKELLNPIYGMFTYYQDSNLLWFSDTCFVEHNWFHLIGITCGLAIYNSTVVDLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFFLLLLKELLNPIYGMFTYYQDSNLLWFSDTCFVEHNWFHLIGITCGLAIYNSTVVDLH
640 650 660 670 680 690
810 820 830 840 850 860
pF1KSD FPLALYKKLLNVKPGLEDLKELSPTEGRSLQELLDYPGEDVEETFCLNFTICRESYGVIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPLALYKKLLNVKPGLEDLKELSPTEGRSLQELLDYPGEDVEETFCLNFTICRESYGVIE
700 710 720 730 740 750
870 880 890 900 910 920
pF1KSD QKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSSGFLKVCGGKVLELFQPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSSGFLKVCGGKVLELFQPS
760 770 780 790 800 810
930 940 950 960 970 980
pF1KSD ELRAMMVGNSNYNWEELEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELRAMMVGNSNYNWEELEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSD
820 830 840 850 860 870
990 1000 1010 1020 1030 1040
pF1KSD RIPIYGMASLQIVIQSTASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQALDNYEGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIPIYGMASLQIVIQSTASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQALDNYEGFS
880 890 900 910 920 930
1050
pF1KSD LA
::
NP_001 LA
>>XP_016864296 (OMIM: 605200) PREDICTED: probable E3 ubi (924 aa)
initn: 6167 init1: 3497 opt: 6155 Z-score: 7076.9 bits: 1320.9 E(85289): 0
Smith-Waterman score: 6155; 99.1% identity (99.1% similar) in 932 aa overlap (119-1050:1-924)
90 100 110 120 130 140
pF1KSD VACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWH
::::::::::::::::::::::::::::::
XP_016 MTTEDSVAVPRLIQKLNQQTILQVSCGNWH
10 20 30
150 160 170 180 190 200
pF1KSD CLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLS
40 50 60 70 80 90
210 220 230 240 250 260
pF1KSD GAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGA
100 110 120 130 140 150
270 280 290 300 310 320
pF1KSD GSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG
160 170 180 190 200 210
330 340 350 360 370 380
pF1KSD TGHTCNVKCPSPVKGYWAAHSGQLSARADRFKYHIVKQIFSGGDQTFVLCSKYENYSPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGHTCNVKCPSPVKGYWAAHSGQLSARADRFKYHIVKQIFSGGDQTFVLCSKYENYSPAV
220 230 240 250 260 270
390 400 410 420 430 440
pF1KSD DFRTMNQAHYTSLINDETIAVWRQKLSEHNNANTINGVVQILSSAACWNGSFLEKKIDEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFRTMNQAHYTSLINDETIAVWRQKLSEHNNANTINGVVQILSSAACWNGSFLEKKIDEH
280 290 300 310 320 330
450 460 470 480 490 500
pF1KSD FKTSPKIPGIDLNSTRVLFEKLMNSQHSMILEQILNSFESCLIPQLSSSPPDVEAMRIYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKTSPKIPGIDLNSTRVLFEKLMNSQHSMILEQILNSFESCLIPQLSSSPPDVEAMRIYL
340 350 360 370 380 390
510 520 530 540 550 560
pF1KSD ILPEFPLLQDSKYYITLTIPLAMAILRLDTNPSKVLDNWWSQVCPKYFMKLVNLYKGAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILPEFPLLQDSKYYITLTIPLAMAILRLDTNPSKVLDNWWSQVCPKYFMKLVNLYKGAVL
400 410 420 430 440 450
570 580 590 600 610 620
pF1KSD YLLRGRKTFLIPVLFNNYITAALKLLEKLYKVNLKVKHVEYDTFYIPEISNLVDIQEDYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLLRGRKTFLIPVLFNNYITAALKLLEKLYKVNLKVKHVEYDTFYIPEISNLVDIQEDYL
460 470 480 490 500 510
630 640 650 660 670 680
pF1KSD MWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQAKTKMLQTDAELQMQVAVNGANLQNVFM
::::::::: :::::::::::::::::::::::::::::::::::::::::::
XP_016 MWFLHQAGM--------DTVTLCSYPFIFDAQAKTKMLQTDAELQMQVAVNGANLQNVFM
520 530 540 550 560
690 700 710 720 730 740
pF1KSD LLTLEPLLARSPFLVLHVRRNNLVGDALRELSIHSDIDLKKPLKVIFDGEEAVDAGGVTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLTLEPLLARSPFLVLHVRRNNLVGDALRELSIHSDIDLKKPLKVIFDGEEAVDAGGVTK
570 580 590 600 610 620
750 760 770 780 790 800
pF1KSD EFFLLLLKELLNPIYGMFTYYQDSNLLWFSDTCFVEHNWFHLIGITCGLAIYNSTVVDLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFFLLLLKELLNPIYGMFTYYQDSNLLWFSDTCFVEHNWFHLIGITCGLAIYNSTVVDLH
630 640 650 660 670 680
810 820 830 840 850 860
pF1KSD FPLALYKKLLNVKPGLEDLKELSPTEGRSLQELLDYPGEDVEETFCLNFTICRESYGVIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FPLALYKKLLNVKPGLEDLKELSPTEGRSLQELLDYPGEDVEETFCLNFTICRESYGVIE
690 700 710 720 730 740
870 880 890 900 910 920
pF1KSD QKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSSGFLKVCGGKVLELFQPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSSGFLKVCGGKVLELFQPS
750 760 770 780 790 800
930 940 950 960 970 980
pF1KSD ELRAMMVGNSNYNWEELEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELRAMMVGNSNYNWEELEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSD
810 820 830 840 850 860
990 1000 1010 1020 1030 1040
pF1KSD RIPIYGMASLQIVIQSTASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQALDNYEGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIPIYGMASLQIVIQSTASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQALDNYEGFS
870 880 890 900 910 920
1050
pF1KSD LA
::
XP_016 LA
>>XP_005263388 (OMIM: 605200) PREDICTED: probable E3 ubi (903 aa)
initn: 6393 init1: 5979 opt: 5982 Z-score: 6878.0 bits: 1284.1 E(85289): 0
Smith-Waterman score: 5982; 98.4% identity (99.3% similar) in 903 aa overlap (1-901:1-902)
10 20 30 40 50 60
pF1KSD MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
790 800 810 820 830 840
850 860 870 880 890
pF1KSD LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQ--EFVDAYVNYVF
::::::::::::::::::::::::::::::::::::::::::::::. .: : .. . :
XP_005 LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRKKNDFED-FAVFRF
850 860 870 880 890
900 910 920 930 940 950
pF1KSD QISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSAT
...
XP_005 RLTR
900
>>XP_005263389 (OMIM: 605200) PREDICTED: probable E3 ubi (896 aa)
initn: 5976 init1: 5976 opt: 5976 Z-score: 6871.1 bits: 1282.8 E(85289): 0
Smith-Waterman score: 5976; 100.0% identity (100.0% similar) in 886 aa overlap (1-886:1-886)
10 20 30 40 50 60
pF1KSD MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRLSKKPQLWGK
850 860 870 880 890
910 920 930 940 950 960
pF1KSD SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
>>XP_005263387 (OMIM: 605200) PREDICTED: probable E3 ubi (993 aa)
initn: 4586 init1: 4586 opt: 4601 Z-score: 5288.7 bits: 990.2 E(85289): 0
Smith-Waterman score: 6579; 94.6% identity (94.6% similar) in 1050 aa overlap (1-1050:1-993)
10 20 30 40 50 60
pF1KSD MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLKVKHVEYDTFYIPEISNLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD AKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELS
::::::::::::::::
XP_005 AKTKMLQTDAELQMQV--------------------------------------------
670
730 740 750 760 770 780
pF1KSD IHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 -------------IFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDT
680 690 700 710 720
790 800 810 820 830 840
pF1KSD CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQE
730 740 750 760 770 780
850 860 870 880 890 900
pF1KSD LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQI
790 800 810 820 830 840
910 920 930 940 950 960
pF1KSD SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHP
850 860 870 880 890 900
970 980 990 1000 1010 1020
pF1KSD TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYN
910 920 930 940 950 960
1030 1040 1050
pF1KSD LLDLPKYSSKEILSARLTQALDNYEGFSLA
::::::::::::::::::::::::::::::
XP_005 LLDLPKYSSKEILSARLTQALDNYEGFSLA
970 980 990
>>NP_071362 (OMIM: 609248) probable E3 ubiquitin-protein (1057 aa)
initn: 3818 init1: 2042 opt: 3972 Z-score: 4564.7 bits: 856.3 E(85289): 0
Smith-Waterman score: 3972; 56.0% identity (78.7% similar) in 1057 aa overlap (1-1049:1-1056)
10 20 30 40 50 60
pF1KSD MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGL
::::: :.:: :.. . :: ::. :. .. :..:.:: :.::.:.:: :::::
NP_071 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMT
: ::::::. .::::. :: :.:. :.:::.:.:::.:.::...:: :::::::.
NP_071 NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS
.:. . ::: :..:.. :.::.:: .: :::. .. : ::.:..:::::: . .:.:
NP_071 SEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLR
:: ..:: :::. ::::::::::.:.::::.:::: :. :::::.::.:: : .: ::
NP_071 PQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIA
.::.::: :::.:::.::: :::::::::. :::::.: . :.:::.:.::::: ::.::
NP_071 SQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTEIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD CGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFK
:::::: ::::::: ::.:: :. :::::: : : : : ::: : ..:: : .
NP_071 CGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDSEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
: ::.:::::::.: :. .: .: ::: : .. .:. : : . : . .
NP_071 YFCVKRIFSGGDQSFSHYSSPQNCGPPDDFRCPNPTKQIWTVNEALIQKWLSYPSGRFPV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILE
. : . .::..: ::::: . :.:..:. .. :.:.:..:.::.::.. .: .: .
NP_071 EIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGTRFSGVDMNAARLLFHKLIQPDHPQISQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNP
:. :.:. :::.:.:: :::::.:.:: ::: ::..::. . :..::.. :.. :. :
NP_071 QVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDSNNFTTIAIPFGTALVNLEKAP
490 500 510 520 530 540
550 560 570 580 590
pF1KSD SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFLIPV---LFNNYITAALKLLEKL
:::.:::: . : :.:.:.:.: .:..::. : . : .::... .:::.:: :
NP_071 LKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEIL
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD YKVNLKVKHV-EYDTFYIPEISNLVDIQEDYLMWFLHQA-GMKARPSIIQ--DT-VTLCS
..:: :. .. .:: ::: :...:.::..::. : .:: :: . .. . : ::.:.
NP_071 HRVNEKMGQIIQYDKFYIHEVQELIDIRNDYINWVQQQAYGMDVNHGLTELADIPVTICT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD YPFIFDAQAKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLV
:::.::::::: .::::: ::::.:.. :. ::: :. : . . .: :.: :::.:.:
NP_071 YPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLF-LPVIESVNPCLILVVRRENIV
670 680 690 700 710
720 730 740 750 760 770
pF1KSD GDALRELSIHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDS
:::.. : ..:: :::::::: ::.::::::: ::::::...:::.: :::: ::.::
NP_071 GDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDS
720 730 740 750 760 770
780 790 800 810 820 830
pF1KSD NLLWFSDTCFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSP
:.:::: : . . :::::. ::::::: :.::::::::::::::. ::.:.::::: :
NP_071 RLIWFSDKTFEDSDLFHLIGVICGLAIYNCTIVDLHFPLALYKKLLKKKPSLDDLKELMP
780 790 800 810 820 830
840 850 860 870 880 890
pF1KSD TEGRSLQELLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDA
:::.:.::::: .:.:::::::::: :..:. : :.:. .: ...: :.::::::::
NP_071 DVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDA
840 850 860 870 880 890
900 910 920 930 940 950
pF1KSD YVNYVFQISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYK
::.:.:. :: . :: .:: :::::::: ::::.::.::..::.::.:.:::... ::
NP_071 YVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYK
900 910 920 930 940 950
960 970 980 990 1000 1010
pF1KSD GDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYL
:.: : :::.:.:::.:::.::::::.::::::::::::: :: ::..:::::..:::::
NP_071 GEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGEEYL
960 970 980 990 1000 1010
1020 1030 1040 1050
pF1KSD PVAHTCYNLLDLPKYSSKEILSARLTQALDNYEGFSLA
::.:::.::::::::. :: : ..: ::.:. :::::
NP_071 PVSHTCFNLLDLPKYTEKETLRSKLIQAIDHNEGFSLI
1020 1030 1040 1050
1050 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:30:10 2016 done: Wed Nov 2 23:30:12 2016
Total Scan time: 11.930 Total Display time: 0.480
Function used was FASTA [36.3.4 Apr, 2011]