Result of FASTA (omim) for
pF1KSDA0031
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0031, 972 aa
1>>>pF1KSDA0031 972 - 972 aa - 972 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1155+/-0.000511; mu= 18.1824+/- 0.032
mean_var=108.7841+/-21.809, 0's: 0 Z-trim(110.7): 108 B-trim: 222 in 1/53
Lambda= 0.122968
statistics sampled from 19067 (19172) to 19067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.225), width: 16
Scan time: 10.210
The best scores are: opt bits E(85289)
NP_001245282 (OMIM: 603892,610536) 116 kDa U5 smal ( 972) 6506 1166.3 0
NP_004238 (OMIM: 603892,610536) 116 kDa U5 small n ( 972) 6506 1166.3 0
NP_001136077 (OMIM: 603892,610536) 116 kDa U5 smal ( 937) 6265 1123.6 0
NP_001245283 (OMIM: 603892,610536) 116 kDa U5 smal ( 962) 5506 988.9 0
NP_001952 (OMIM: 130610,609306) elongation factor ( 858) 1738 320.4 2.5e-86
NP_001332797 (OMIM: 617064,617065) translation fac ( 629) 289 63.3 4.7e-09
NP_068746 (OMIM: 617064,617065) translation factor ( 669) 289 63.3 4.9e-09
NP_733781 (OMIM: 606544) ribosome-releasing factor ( 513) 234 53.4 3.5e-06
XP_011541993 (OMIM: 606544) PREDICTED: ribosome-re ( 564) 234 53.5 3.8e-06
NP_733792 (OMIM: 606544) ribosome-releasing factor ( 732) 234 53.6 4.6e-06
NP_115756 (OMIM: 606544) ribosome-releasing factor ( 779) 234 53.6 4.8e-06
XP_016865475 (OMIM: 606544) PREDICTED: ribosome-re ( 779) 234 53.6 4.8e-06
NP_001268231 (OMIM: 606544) ribosome-releasing fac ( 811) 234 53.6 4.9e-06
XP_006713858 (OMIM: 606639,609060) PREDICTED: elon ( 712) 217 50.5 3.6e-05
NP_001295095 (OMIM: 606639,609060) elongation fact ( 591) 214 49.9 4.6e-05
NP_079272 (OMIM: 606639,609060) elongation factor ( 751) 214 50.0 5.5e-05
NP_001295093 (OMIM: 606639,609060) elongation fact ( 770) 214 50.0 5.6e-05
>>NP_001245282 (OMIM: 603892,610536) 116 kDa U5 small nu (972 aa)
initn: 6506 init1: 6506 opt: 6506 Z-score: 6241.7 bits: 1166.3 E(85289): 0
Smith-Waterman score: 6506; 100.0% identity (100.0% similar) in 972 aa overlap (1-972:1-972)
10 20 30 40 50 60
pF1KSD MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
910 920 930 940 950 960
970
pF1KSD LAKQDVVLNYPM
::::::::::::
NP_001 LAKQDVVLNYPM
970
>>NP_004238 (OMIM: 603892,610536) 116 kDa U5 small nucle (972 aa)
initn: 6506 init1: 6506 opt: 6506 Z-score: 6241.7 bits: 1166.3 E(85289): 0
Smith-Waterman score: 6506; 100.0% identity (100.0% similar) in 972 aa overlap (1-972:1-972)
10 20 30 40 50 60
pF1KSD MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
910 920 930 940 950 960
970
pF1KSD LAKQDVVLNYPM
::::::::::::
NP_004 LAKQDVVLNYPM
970
>>NP_001136077 (OMIM: 603892,610536) 116 kDa U5 small nu (937 aa)
initn: 6265 init1: 6265 opt: 6265 Z-score: 6010.8 bits: 1123.6 E(85289): 0
Smith-Waterman score: 6265; 100.0% identity (100.0% similar) in 937 aa overlap (36-972:1-937)
10 20 30 40 50 60
pF1KSD YDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDKKY
::::::::::::::::::::::::::::::
NP_001 MDDDDDDDDVGDHDDDHPGMEVVLHEDKKY
10 20 30
70 80 90 100 110 120
pF1KSD YPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLADLMDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLADLMDN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD SELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KSD VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKH
160 170 180 190 200 210
250 260 270 280 290 300
pF1KSD AVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLG
220 230 240 250 260 270
310 320 330 340 350 360
pF1KSD NVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KSD QRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFG
340 350 360 370 380 390
430 440 450 460 470 480
pF1KSD EFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTD
400 410 420 430 440 450
490 500 510 520 530 540
pF1KSD DGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVP
460 470 480 490 500 510
550 560 570 580 590 600
pF1KSD AGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLD
520 530 540 550 560 570
610 620 630 640 650 660
pF1KSD GLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCET
580 590 600 610 620 630
670 680 690 700 710 720
pF1KSD VVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWD
640 650 660 670 680 690
730 740 750 760 770 780
pF1KSD LLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIR
700 710 720 730 740 750
790 800 810 820 830 840
pF1KSD NVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSA
760 770 780 790 800 810
850 860 870 880 890 900
pF1KSD VYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQ
820 830 840 850 860 870
910 920 930 940 950 960
pF1KSD IVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQD
880 890 900 910 920 930
970
pF1KSD VVLNYPM
:::::::
NP_001 VVLNYPM
>>NP_001245283 (OMIM: 603892,610536) 116 kDa U5 small nu (962 aa)
initn: 5459 init1: 5459 opt: 5506 Z-score: 5283.0 bits: 988.9 E(85289): 0
Smith-Waterman score: 6401; 99.0% identity (99.0% similar) in 972 aa overlap (1-972:1-962)
10 20 30 40 50 60
pF1KSD MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
::::::::::::::::::::::: :::::::::::::::::::::::::::
NP_001 DLMDNSELIRNVTLCGHLHHGKT----------HPEIRKRYDQDLCYTDILFTEQERGVG
130 140 150 160 170
190 200 210 220 230 240
pF1KSD IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
300 310 320 330 340 350
370 380 390 400 410 420
pF1KSD PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
360 370 380 390 400 410
430 440 450 460 470 480
pF1KSD KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
420 430 440 450 460 470
490 500 510 520 530 540
pF1KSD MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
480 490 500 510 520 530
550 560 570 580 590 600
pF1KSD VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
540 550 560 570 580 590
610 620 630 640 650 660
pF1KSD PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
600 610 620 630 640 650
670 680 690 700 710 720
pF1KSD TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
660 670 680 690 700 710
730 740 750 760 770 780
pF1KSD KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
720 730 740 750 760 770
790 800 810 820 830 840
pF1KSD DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
780 790 800 810 820 830
850 860 870 880 890 900
pF1KSD DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
840 850 860 870 880 890
910 920 930 940 950 960
pF1KSD FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
900 910 920 930 940 950
970
pF1KSD LAKQDVVLNYPM
::::::::::::
NP_001 LAKQDVVLNYPM
960
>>NP_001952 (OMIM: 130610,609306) elongation factor 2 [H (858 aa)
initn: 2117 init1: 637 opt: 1738 Z-score: 1671.0 bits: 320.4 E(85289): 2.5e-86
Smith-Waterman score: 2153; 39.2% identity (69.6% similar) in 873 aa overlap (114-954:4-856)
90 100 110 120 130 140
pF1KSD EDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKT
. .: . .::.. :::... .:. :::.
NP_001 MVNFTVDQIRAIMDKKANIRNMSVIAHVDHGKS
10 20 30
150 160 170 180 190
pF1KSD CFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVV----------LPDT
..: :. .. : . .:: :::: . :::: ... . ..
NP_001 TLTDSLVCKAGIIASARAGETR-FTDTRKDEQERCITIKSTAISLFYELSENDLNFIKQS
40 50 60 70 80 90
200 210 220 230 240 250
pF1KSD K-GKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLA
: : ..:.:..:.::::.::.::::.::..::... .: . :: ..:: ....:. ::.
NP_001 KDGAGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK
100 110 120 130 140 150
260 270 280 290 300
pF1KSD VTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDE-----NLILSPLLGNV
.. .::.:: .:::.: : . : ...::..:: .:: :. : :....:.::.:
NP_001 PVLMMNKMDRALLELQLEPEELYQTFQRIVENVNVIISTYGEGESGPMGNIMIDPVLGTV
160 170 180 190 200 210
310 320 330 340 350
pF1KSD CFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR-------LWGDIYFNPKTRK
:.:. .. ::: .::..:. : :... : ::. :::: ::.: . :
NP_001 GFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGK
220 230 240 250 260 270
360 370 380 390 400 410
pF1KSD FTKKAPTSSSQ---RSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNI
:.:.: . .. :.: ..::.:..:.. ... . ...: :.: .:. .
NP_001 FSKSATSPEGKKLPRTFCQLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDSEDKDKEG
280 290 300 310 320 330
420 430 440 450 460 470
pF1KSD RPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDG
.:::. : .... ....: . :.::: .. : . : : : :.. . ....::: :
NP_001 KPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELLYEGPPDDEAAMGIKSCDPKG
340 350 360 370 380 390
480 490 500 510 520 530
pF1KSD PLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWI
::: . .:: :.: .:.:::::.:: . .: :...: ::: .:: . . : .
NP_001 PLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPNYTPGKKEDLYLKPIQRTIL
400 410 420 430 440 450
540 550 560 570 580 590
pF1KSD SVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAV
..:: .. :: :: : . :::: .:::.::: :.:. .: .::... :...::
NP_001 MMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTF---EHAHNMRVMKFSVSPVVRVAV
460 470 480 490 500
600 610 620 630 640 650
pF1KSD EPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEID
: ::..:::...::... :: : . .::::::.: :.:::.:. ..::.. .. :
NP_001 EAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIP
510 520 530 540 550 560
660 670 680 690 700 710
pF1KSD IKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRK
:: .::::.. ::: : :.. :....:::.:.. : :.:. ::::::.. :. . :
NP_001 IKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELK
570 580 590 600 610 620
720 730 740 750 760 770
pF1KSD KLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQW
. .... ::.::. ::.:: ::::.::::::.: : . :. .:::.: ::::
NP_001 QRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQW
630 640 650 660 670 680
780 790 800 810 820 830
pF1KSD GTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYY
.:.:: ::.: .:.:.: . :... . .::::::::::::: .:.. : : :::::: :
NP_001 ATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIY
690 700 710 720 730 740
840 850 860 870 880 890
pF1KSD FVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQ
.::.: : . :...: :: :.:::: ... . :.:....::..:. .:::: .:::..:
NP_001 LVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTG
750 760 770 780 790 800
900 910 920 930 940 950
pF1KSD GQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV-SISK
:::: :: ::::.::::.:.: :: . . .::.::::.: . ....
NP_001 GQAFPQCVFDHWQILPGDPFDNSS--RP----------SQVVAETRKRKGLKEGIPALDN
810 820 830 840 850
960 970
pF1KSD FFDDPMLLELAKQDVVLNYPM
:.:
NP_001 FLDKL
>>NP_001332797 (OMIM: 617064,617065) translation factor (629 aa)
initn: 257 init1: 194 opt: 289 Z-score: 283.5 bits: 63.3 E(85289): 4.7e-09
Smith-Waterman score: 289; 37.8% identity (68.1% similar) in 135 aa overlap (127-261:66-197)
100 110 120 130 140 150
pF1KSD VKTKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPE
: ::: .. .:. :::. ..: :.: :
NP_001 LGAAPESWATDRLYSSAEFKEKLDMSRFPVENIRNFSIVAHVDHGKSTLADRLLELTGTI
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD IRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVT
. . .... : : .:.:::. .:. ... . .::.::.:..::::::.:: ::.
NP_001 DKTKNNKQV--LDKLQVERERGITVKAQTASLFY-NCEGKQYLLNLIDTPGHVDFSYEVS
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD AGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYY
.: .::.: .:: ::.. .: . : . .:.: :::::
NP_001 RSLSACQGVLLVVDANEGIQAQTVANFFLAFEAQLSVIPVINKIDLKNADPERVENQIEK
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD KLRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINY
NP_001 VFDIPSDECIKISAKLGTNVESVLQAIIERIPPPKVHRKNPLRALVFDSTFDQYRGVIAN
220 230 240 250 260 270
>>NP_068746 (OMIM: 617064,617065) translation factor GUF (669 aa)
initn: 257 init1: 194 opt: 289 Z-score: 283.1 bits: 63.3 E(85289): 4.9e-09
Smith-Waterman score: 289; 37.8% identity (68.1% similar) in 135 aa overlap (127-261:66-197)
100 110 120 130 140 150
pF1KSD VKTKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPE
: ::: .. .:. :::. ..: :.: :
NP_068 LGAAPESWATDRLYSSAEFKEKLDMSRFPVENIRNFSIVAHVDHGKSTLADRLLELTGTI
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD IRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVT
. . .... : : .:.:::. .:. ... . .::.::.:..::::::.:: ::.
NP_068 DKTKNNKQV--LDKLQVERERGITVKAQTASLFY-NCEGKQYLLNLIDTPGHVDFSYEVS
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD AGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYY
.: .::.: .:: ::.. .: . : . .:.: :::::
NP_068 RSLSACQGVLLVVDANEGIQAQTVANFFLAFEAQLSVIPVINKIDLKNADPERVENQIEK
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD KLRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINY
NP_068 VFDIPSDECIKISAKLGTNVESVLQAIIERIPPPKVHRKNPLRALVFDSTFDQYRGVIAN
220 230 240 250 260 270
>>NP_733781 (OMIM: 606544) ribosome-releasing factor 2, (513 aa)
initn: 274 init1: 163 opt: 234 Z-score: 232.0 bits: 53.4 E(85289): 3.5e-06
Smith-Waterman score: 234; 32.2% identity (57.9% similar) in 152 aa overlap (129-279:70-216)
100 110 120 130 140 150
pF1KSD TKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQT-HPEI
:::. . .:. ::: .. .. . . .
NP_733 PLGRNCSSLPGLIGNDIKSLHSIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD RKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTA
:. ::.. :.:::. :.:. :: : :: : :..::::::.:. ::
NP_733 LGDVDDGDTVTDFMAQERERGITIQSAAVTF---DWKG--YRVNLIDTPGHVDFTLEVER
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD GLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYK
::. ::.: .::. :: .: . ..: .. . .::.:. .: . :
NP_733 CLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRICFLNKMDKTGASFKYAVESIREK
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD LRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQ
:.
NP_733 LKAKPLLLQLPIGEAKTFKGVVDVVMKEKLLWNCNSNDGKDFERKPLLEMNDPELLKETT
220 230 240 250 260 270
>>XP_011541993 (OMIM: 606544) PREDICTED: ribosome-releas (564 aa)
initn: 274 init1: 163 opt: 234 Z-score: 231.4 bits: 53.5 E(85289): 3.8e-06
Smith-Waterman score: 238; 23.3% identity (48.2% similar) in 533 aa overlap (129-626:70-529)
100 110 120 130 140 150
pF1KSD TKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQT-HPEI
:::. . .:. ::: .. .. . . .
XP_011 PLGRNCSSLPGLIGNDIKSLHSIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD RKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTA
:. ::.. :.:::. :.:. :: : :: : :..::::::.:. ::
XP_011 LGDVDDGDTVTDFMAQERERGITIQSAAVTF---DWKG--YRVNLIDTPGHVDFTLEVER
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD GLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYK
::. ::.: .::. :: .: . ..: .. . .::.:. : : .:
XP_011 CLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRICFLNKMDK---------TGASFK
160 170 180 190 200
280 290 300 310 320 330
pF1KSD LRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQ
.. : :.: .::: . . .: :: . . :. ..
XP_011 Y-----------AVESIREKLKAKPLL-----------LQLPIGE-AKTFKGVV-DVVMK
210 220 230 240
340 350 360 370 380 390
pF1KSD EFAKRLWGDIYFNPKTRKFTKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPR-TL
: : ::. . : : .: .. ... : .. ::. :.: . .:
XP_011 E--KLLWNCNSNDGKD--FERKPLLEMNDPELLKETTEARNALIEQVA-DLDDEFADLVL
250 260 270 280 290
400 410 420 430 440
pF1KSD DELGIH---LTKEELKLNIRPL------LRLVCKKFFGE--FTGFVDMCVQHIPSPKVGA
.:.. . : :.:. :. . . ..: . . . . ..: ....:::.
XP_011 EEFSENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPE---
300 310 320 330 340 350
450 460 470 480 490 500
pF1KSD KPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQ
:..: : .. : .: . : .: :. ::::.
XP_011 ----ERNY---------EFLQWYKDD---LCALAFKVLHDKQRGPLVFMRIYSGTIKPQL
360 370 380 390
510 520 530 540 550
pF1KSD PVKVLGENYTLEDEEDSQICT--VGRLWISVARYHIEVNRVPAGNWVLIEGVDQP-----
.. .. : :: ..:: . : :.:. . ::: .: :. .
XP_011 AIHNINGN-----------CTERISRLLLPFADQHVEIPSLTAGNIALTVGLKHTATGDT
400 410 420 430 440
560 570 580 590 600
pF1KSD IV--KTATITEPRGNEEAQIFRPLKFNTTSVIKIA------------VEPVNPSELPKML
:: :..... : :. . . : . . .: .:: . :. : .
XP_011 IVSSKSSALAAARRAEREGEKKHRQNNEAERLLLAGVEIPEPVFFCTIEPPSLSKQPDLE
450 460 470 480 490 500
610 620 630 640 650 660
pF1KSD DGLRKVNKSYPSLTTKVE-ESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFC
.:. ... ::: .... .::.
XP_011 HALKCLQREDPSLKVRLDPDSGQAPPRSCPHQLYSSSIGQKFGFAVGKCWYLAKCWHH
510 520 530 540 550 560
>>NP_733792 (OMIM: 606544) ribosome-releasing factor 2, (732 aa)
initn: 349 init1: 163 opt: 234 Z-score: 229.9 bits: 53.6 E(85289): 4.6e-06
Smith-Waterman score: 307; 22.7% identity (47.3% similar) in 807 aa overlap (129-910:70-720)
100 110 120 130 140 150
pF1KSD TKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQT-HPEI
:::. . .:. ::: .. .. . . .
NP_733 PLGRNCSSLPGLIGNDIKSLHSIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD RKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTA
:. ::.. :.:::. :.:. :: : :: : :..::::::.:. ::
NP_733 LGDVDDGDTVTDFMAQERERGITIQSAAVTF---DWKG--YRVNLIDTPGHVDFTLEVER
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD GLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYK
::. ::.: .::. :: .: . ..: .. . .::.:. : : .:
NP_733 CLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRICFLNKMDK---------TGASFK
160 170 180 190 200
280 290 300 310 320 330
pF1KSD LRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQ
.. : :.: .::: . . .: :: . . :. ..
NP_733 Y-----------AVESIREKLKAKPLL-----------LQLPIGE-AKTFKGVV-DVVMK
210 220 230 240
340 350 360 370 380 390
pF1KSD EFAKRLWGDIYFNPKTRKFTKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLD
: : ::. . : : .: .. ... : .. ::. :.: :
NP_733 E--KLLWNCNSNDGKD--FERKPLLEMNDPELLKETTEARNALIEQVA-DLD-------D
250 260 270 280
400 410 420 430 440 450
pF1KSD ELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGV
:.. :: ..: .: :. .:. :. . : : :
NP_733 EFA----------------DLVLEEFSENF----DL----LPAEKL--QTAI-HRVT---
290 300 310
460 470 480 490 500 510
pF1KSD DSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSG-TIHAGQPVKVLGENYTL
:... :..: .. . :.: .:.. :.. .: . .:: .
NP_733 ---LAQTAV------PVLCGSAL---KNKGIQ-----PLLDAVTMYLPSPEE---RNYEF
320 330 340 350
520 530 540 550 560
pF1KSD EDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQP-----IV--KTATITEPR
.. ..:: . : :.:. . ::: .: :. . :: :..... :
NP_733 LER-------ISRLLLPFADQHVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAAR
360 370 380 390 400 410
570 580 590 600 610
pF1KSD GNEEAQIFRPLKFNTTSVIKIA------------VEPVNPSELPKMLDGLRKVNKSYPSL
:. . . : . . .: .:: . :. : . .:. ... :::
NP_733 RAEREGEKKHRQNNEAERLLLAGVEIPEPVFFCTIEPPSLSKQPDLEHALKCLQREDPSL
420 430 440 450 460 470
620 630 640 650 660 670
pF1KSD TTKVE-ESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFA
.... .::. :. : :::... ..:: .. : . :: .
NP_733 KVRLDPDSGQTVLCGMGELHIE-IIHD--RIKREYGL----------ETYL---------
480 490 500 510
680 690 700 710 720 730
pF1KSD ETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFG
::. . : : : : . :: : :.. . :
NP_733 -------------GPLQVAYRETILNSVRATDTLDRTLG-------DKRHLVTVEVEARP
520 530 540 550
740 750 760 770 780 790
pF1KSD PDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVV
.... ... ....:: ...: .:.. . .::: :..: . . . ..
NP_733 IETSSVMPVIEFEYAESINEGLLKVSQEAIENGIHSACLQGPLLGSPIQDVAITLHSLTI
560 570 580 590 600 610
800 810 820 830 840 850
pF1KSD AQEPLHRGGGQIIPTA--RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRR
: : . . .: : : .:. : ...:: . .:: . : .: : . ::.::
NP_733 -----HPGTSTTMISACVSRCVQKALKKADKQVLEPLMNLEVTVARDYLSPVLADLAQRR
620 630 640 650 660
860 870 880 890 900 910
pF1KSD GHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQA-FSLSVFHHWQIVPGDPLD
:.. . . . . .:.: . .:. : ::: :.:.: :.: . . . : :
NP_733 GNIQEIQTRQDNKV--VIGFVPLAEIMGYSTVLRTLTSGSATFALELSTYQAMNPQDQNT
670 680 690 700 710 720
920 930 940 950 960 970
pF1KSD KSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQDVVLNYPM
NP_733 LLNRRSGLT
730
972 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:28:48 2016 done: Wed Nov 2 23:28:49 2016
Total Scan time: 10.210 Total Display time: 0.230
Function used was FASTA [36.3.4 Apr, 2011]