FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0024, 473 aa
  1>>>pF1KSDA0024 473 - 473 aa - 473 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2112+/-0.00101; mu= 18.5642+/- 0.060
 mean_var=65.7404+/-13.863, 0's: 0 Z-trim(103.9): 20  B-trim: 0 in 0/48
 Lambda= 0.158182
 statistics sampled from 7622 (7629) to 7622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.234), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS6271.1 PTDSS1 gene_id:9791|Hs108|chr8          ( 473) 3317 766.1       0
CCDS7696.1 PTDSS2 gene_id:81490|Hs108|chr11        ( 487)  844 201.8 1.4e-51


>>CCDS6271.1 PTDSS1 gene_id:9791|Hs108|chr8               (473 aa)
 initn: 3317 init1: 3317 opt: 3317  Z-score: 4089.8  bits: 766.1 E(32554):    0
Smith-Waterman score: 3317; 100.0% identity (100.0% similar) in 473 aa overlap (1-473:1-473)

               10        20        30        40        50        60
pF1KSD MASCVGSRTLSKDDVNYKMHFRMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYFAFTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MASCVGSRTLSKDDVNYKMHFRMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYFAFTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DDSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLVFLLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DDSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLVFLLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LNFEQVKSLMYWLDPNLRYATREADVMEYAVNCHVITWERIISHFDIFAFGHFWGWAMKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LNFEQVKSLMYWLDPNLRYATREADVMEYAVNCHVITWERIISHFDIFAFGHFWGWAMKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLIRSYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGMVVCRFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LLIRSYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGMVVCRFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDPKSSFQRVAGVYLFMIIWQLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDPKSSFQRVAGVYLFMIIWQLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQCKRVGTQCWVFGVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQCKRVGTQCWVFGVI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCLYGMIWYAEHYGHREKTYSECE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCLYGMIWYAEHYGHREKTYSECE
              370       380       390       400       410       420

              430       440       450       460       470   
pF1KSD DGTYSPEISWHHRKGTKGSEDSPPKHAGNNESHSSRRRNRHSKSKVTNGVGKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DGTYSPEISWHHRKGTKGSEDSPPKHAGNNESHSSRRRNRHSKSKVTNGVGKK
              430       440       450       460       470   

>>CCDS7696.1 PTDSS2 gene_id:81490|Hs108|chr11             (487 aa)
 initn: 733 init1: 400 opt: 844  Z-score: 1039.6  bits: 201.8 E(32554): 1.4e-51
Smith-Waterman score: 844; 34.4% identity (64.8% similar) in 395 aa overlap (22-404:44-429)

                        10        20         30        40        50
pF1KSD          MASCVGSRTLSKDDVNYKMHFRMINEQQV-EDITIDFFYRPHTITLLSFTI
                                     :  .:..: .: :  ::.: ::.:.: .  
CCDS76 PESPVPAGRASLEEPPDGPSAGQATGPGEGRRSTESEVYDDGTNTFFWRAHTLTVLFILT
            20        30        40        50        60        70   

               60           70        80        90       100       
pF1KSD VSLMYFAFTRDDSVPED---NIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGL
        .: : .. ..  .:.:   :  :::.. :. :: ..:    .:::.::::: ::. . .
CCDS76 CTLGYVTLLEE--TPQDTAYNTKRGIVASILVFLCFGVTQAKDGPFSRPHPAYWRFWLCV
            80          90       100       110       120       130 

       110       120       130       140       150              160
pF1KSD SVLYFLFLVFLLFLNFEQVKSLMYWLDPNLRYATREADVMEYAVNCHVIT-------WER
       ::.: :::.:.:: . .. .... ..::.:     : :   :. :: .         .. 
CCDS76 SVVYELFLIFILFQTVQDGRQFLKYVDPKLGVPLPERD---YGGNCLIYDPDNETDPFHN
             140       150       160          170       180        

              170       180       190       200       210       220
pF1KSD IISHFDIFAFGHFWGWAMKALLIRSYGLCWTISITWELTELFFMHLLPNFAECWWDQVIL
       : ...: :. .:: :: .:.:.::.. .:  ::. .:. :  . : ::::.:::::. :.
CCDS76 IWDKLDGFVPAHFLGWYLKTLMIRDWWMCMIISVMFEFLEYSLEHQLPNFSECWWDHWIM
      190       200       210       220       230       240        

              230       240       250       260       270       280
pF1KSD DILLCNGGGIWLGMVVCRFLEMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDP
       :.:.::: ::. :: . ..: ..::.: .. .: :  ::.:: ..:::: ::.  .:  :
CCDS76 DVLVCNGLGIYCGMKTLEWLSLKTYKWQGLWNIPTYKGKMKRIAFQFTPYSWVRFEW-KP
      250       260       270       280       290       300        

              290       300       310       320       330       340
pF1KSD KSSFQRVAGVYLFMIIWQLTELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYA
        ::..:  .:  ..... :.:::::.:: .. .   : :   :..:. .. . ..:. : 
CCDS76 ASSLRRWLAVCGIILVFLLAELNTFYLKFVLWMPPEHYLVLLRLVFFVNVGGVAMREIYD
       310       320       330       340       350       360       

               350       360       370       380       390         
pF1KSD YLTDTQ-CKRVGTQCWVFGVIGFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCL
       .. : .  :..: : :. ..:   : .. .:.    .. .  .:.     : .. . : :
CCDS76 FMDDPKPHKKLGPQAWLVAAITATELLIVVKYDPHTLTLSLPFYISQ---CWTLGSVLAL
       370       380       390       400       410          420    

     400       410       420       430       440       450         
pF1KSD YGMIWYAEHYGHREKTYSECEDGTYSPEISWHHRKGTKGSEDSPPKHAGNNESHSSRRRN
          .:                                                       
CCDS76 TWTVWRFFLRDITLRYKETRWQKWQNKDDQGSTVGNGDQHPLGLDEDLLGPGVAEGEGAP
          430       440       450       460       470       480    




473 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:25:49 2016 done: Wed Nov  2 23:25:49 2016
 Total Scan time:  2.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]