FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0016, 145 aa
  1>>>pF1KSDA0016 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5170+/-0.000563; mu= 11.5060+/- 0.034
 mean_var=74.1862+/-14.751, 0's: 0 Z-trim(114.0): 12  B-trim: 16 in 1/50
 Lambda= 0.148906
 statistics sampled from 14545 (14556) to 14545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.447), width:  16
 Scan time:  1.700

The best scores are:                                      opt bits E(32554)
CCDS1603.1 TOMM20 gene_id:9804|Hs108|chr1          ( 145)  944 210.8 2.4e-55
CCDS9734.1 TOMM20L gene_id:387990|Hs108|chr14      ( 152)  434 101.2 2.4e-22


>>CCDS1603.1 TOMM20 gene_id:9804|Hs108|chr1               (145 aa)
 initn: 944 init1: 944 opt: 944  Z-score: 1107.0  bits: 210.8 E(32554): 2.4e-55
Smith-Waterman score: 944; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KSD MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQ
               70        80        90       100       110       120

              130       140     
pF1KSD MLLTKLPTISQRIVSAQSLAEDDVE
       :::::::::::::::::::::::::
CCDS16 MLLTKLPTISQRIVSAQSLAEDDVE
              130       140     

>>CCDS9734.1 TOMM20L gene_id:387990|Hs108|chr14           (152 aa)
 initn: 424 init1: 278 opt: 434  Z-score: 514.6  bits: 101.2 E(32554): 2.4e-22
Smith-Waterman score: 434; 46.8% identity (77.0% similar) in 139 aa overlap (9-143:13-150)

                   10         20        30        40        50     
pF1KSD     MVGRNSAIAAGVCGAL-FIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLS
                   ::..:::. :.:::::..::::.:: :: :::..:. .    :. : .
CCDS97 MPSVRSLLRLLAAAAACGAFAFLGYCIYLNRKRRGDPAFKRRLRDKRRAEPQKAEEQG-T
               10        20        30        40        50          

          60        70        80        90       100       110     
pF1KSD KLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLP
       .: :    . .:..::.:...::  :..::.. :..:: ::. :: ::..::.:...:::
CCDS97 QLWDPTKNKKLQELFLQEVRMGELWLSRGEHRMGIQHLGNALLVCEQPRELLKVFKHTLP
      60        70        80        90       100       110         

         120       130          140     
pF1KSD PPVFQMLLTKLPTISQRI---VSAQSLAEDDVE
       : ::.::: :.: : :..   .. :.  :::  
CCDS97 PKVFEMLLHKIPLICQQFEADMNEQDCLEDDPD
     120       130       140       150  




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:19:32 2016 done: Wed Nov  2 23:19:33 2016
 Total Scan time:  1.700 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]