FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0007, 677 aa
  1>>>pF1KSDA0007 677 - 677 aa - 677 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2537+/-0.000493; mu= 1.9597+/- 0.031
 mean_var=320.3116+/-65.426, 0's: 0 Z-trim(117.9): 28  B-trim: 250 in 1/55
 Lambda= 0.071662
 statistics sampled from 30379 (30406) to 30379 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.357), width:  16
 Scan time:  8.050

The best scores are:                                      opt bits E(85289)
NP_055946 (OMIM: 616195) WD repeat-containing prot ( 677) 4525 482.5 2.2e-135


>>NP_055946 (OMIM: 616195) WD repeat-containing protein   (677 aa)
 initn: 4525 init1: 4525 opt: 4525  Z-score: 2551.6  bits: 482.5 E(85289): 2.2e-135
Smith-Waterman score: 4525; 100.0% identity (100.0% similar) in 677 aa overlap (1-677:1-677)

               10        20        30        40        50        60
pF1KSD MAAGGGGSCDPLAPAGVPCAFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSAHLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAAGGGGSCDPLAPAGVPCAFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSAHLSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TCTCLAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TCTCLAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSENKEEPVKLAVVCRDGQVHLFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSENKEEPVKLAVVCRDGQVHLFE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD HILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMSLLLVYGSWFQPTIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMSLLLVYGSWFQPTIE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RVALNSREPHMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RVALNSREPHMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD QTEQVESKRKSGGNEVSIEERLGAMDIDTHKKGKEDLQTNSFPVLLTQGLESNDFEMLNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QTEQVESKRKSGGNEVSIEERLGAMDIDTHKKGKEDLQTNSFPVLLTQGLESNDFEMLNK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD VLQTRNVNLIKKTVLRMPLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHASYLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VLQTRNVNLIKKTVLRMPLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHASYLST
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD LPDLVPQLGTLYQLMESRVKTFQKLSHLHGKLILLITQVTASEKTKGATSPGQKAKLVYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LPDLVPQLGTLYQLMESRVKTFQKLSHLHGKLILLITQVTASEKTKGATSPGQKAKLVYE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD EESSEEESDDEIADKDSEDNWDEDEEESESEKDEDVEEEDEDAEGKDEENGEDRDTASEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EESSEEESDDEIADKDSEDNWDEDEEESESEKDEDVEEEDEDAEGKDEENGEDRDTASEK
              610       620       630       640       650       660

              670       
pF1KSD ELNGDSDLDPENESEEE
       :::::::::::::::::
NP_055 ELNGDSDLDPENESEEE
              670       




677 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:18:06 2016 done: Wed Nov  2 23:18:07 2016
 Total Scan time:  8.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]