FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0007, 690 aa
  1>>>pF1KF0007 690 - 690 aa - 690 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8546+/-0.00103; mu= -3.3154+/- 0.062
 mean_var=362.1777+/-75.822, 0's: 0 Z-trim(115.3): 19  B-trim: 448 in 1/53
 Lambda= 0.067393
 statistics sampled from 15882 (15898) to 15882 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.488), width:  16
 Scan time:  4.260

The best scores are:                                      opt bits E(32554)
CCDS47295.1 FCHSD1 gene_id:89848|Hs108|chr5        ( 690) 4621 463.4 4.8e-130
CCDS8218.2 FCHSD2 gene_id:9873|Hs108|chr11         ( 740) 1238 134.5 5.2e-31


>>CCDS47295.1 FCHSD1 gene_id:89848|Hs108|chr5             (690 aa)
 initn: 4621 init1: 4621 opt: 4621  Z-score: 2448.2  bits: 463.4 E(32554): 4.8e-130
Smith-Waterman score: 4621; 100.0% identity (100.0% similar) in 690 aa overlap (1-690:1-690)

               10        20        30        40        50        60
pF1KF0 MQPPPRKVKPAQEVKLRFLEQLSILQTWQQREADLLEDIRSYSKQRAAIEREYGQALQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MQPPPRKVKPAQEVKLRFLEQLSILQTWQQREADLLEDIRSYSKQRAAIEREYGQALQKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 AGPFLKREGHRSGEMDSRGRTVFGAWRCLLDATVAGGQTRLQASDRYRDLAGGTGRSAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AGPFLKREGHRSGEMDSRGRTVFGAWRCLLDATVAGGQTRLQASDRYRDLAGGTGRSAKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 QVLRKGTENLQRAQAEVLQSVRELSRSRKLYGQRERVWALAQEKAADVQARLNRSDHGIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QVLRKGTENLQRAQAEVLQSVRELSRSRKLYGQRERVWALAQEKAADVQARLNRSDHGIF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 HSRTSLQKLSTKLSAQSAQYSQQLQAARNEYLLNLVATNAHLDHYYQEELPALLKALVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HSRTSLQKLSTKLSAQSAQYSQQLQAARNEYLLNLVATNAHLDHYYQEELPALLKALVSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KF0 LSEHLRDPLTSLSHTELEAAEVILEHAHRGEQTTSQVSWEQDLKLFLQEPGVFSPTPPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LSEHLRDPLTSLSHTELEAAEVILEHAHRGEQTTSQVSWEQDLKLFLQEPGVFSPTPPQQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KF0 FQPAGTDQVCVLEWGAEGVAGKSGLEKEVQRLTSRAARDYKIQNHGHRVLQRLEQRRQQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FQPAGTDQVCVLEWGAEGVAGKSGLEKEVQRLTSRAARDYKIQNHGHRVLQRLEQRRQQA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KF0 SEREAPSIEQRLQEVRESIRRAQVSQVKGAARLALLQGAGLDVERWLKPAMTQAQDEVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SEREAPSIEQRLQEVRESIRRAQVSQVKGAARLALLQGAGLDVERWLKPAMTQAQDEVEQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KF0 ERRLSEARLSQRDLSPTAEDAELSDFEECEETGELFEEPAPQALATRALPCPAHVVFRYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ERRLSEARLSQRDLSPTAEDAELSDFEECEETGELFEEPAPQALATRALPCPAHVVFRYQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KF0 AGREDELTITEGEWLEVIEEGDADEWVKARNQHGEVGFVPERYLNFPDLSLPESSQDSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AGREDELTITEGEWLEVIEEGDADEWVKARNQHGEVGFVPERYLNFPDLSLPESSQDSDN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KF0 PCGAEPTAFLAQALYSYTGQSAEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PCGAEPTAFLAQALYSYTGQSAEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KF0 SLLVEELLGPPGPPELSDPEQMLPSPSPPSFSPPAPTSVLDGPPAPVLPGDKALDFPGFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SLLVEELLGPPGPPELSDPEQMLPSPSPPSFSPPAPTSVLDGPPAPVLPGDKALDFPGFL
              610       620       630       640       650       660

              670       680       690
pF1KF0 DMMAPRLRPMRPPPPPPAKAPDPGHPDPLT
       ::::::::::::::::::::::::::::::
CCDS47 DMMAPRLRPMRPPPPPPAKAPDPGHPDPLT
              670       680       690

>>CCDS8218.2 FCHSD2 gene_id:9873|Hs108|chr11              (740 aa)
 initn: 1185 init1: 478 opt: 1238  Z-score: 670.2  bits: 134.5 E(32554): 5.2e-31
Smith-Waterman score: 1549; 39.7% identity (67.7% similar) in 731 aa overlap (1-677:1-721)

               10        20        30        40        50        60
pF1KF0 MQPPPRKVKPAQEVKLRFLEQLSILQTWQQREADLLEDIRSYSKQRAAIEREYGQALQKL
       ::::::::: .::.:   .::.. ::. .: : :::::.:..:...:::::::.:..:::
CCDS82 MQPPPRKVKVTQELKNIQVEQMTKLQAKHQAECDLLEDMRTFSQKKAAIEREYAQGMQKL
               10        20        30        40        50        60

                 70        80        90       100       110        
pF1KF0 AGPFLKRE--GHRSGEMDSRGRTVFGAWRCLLDATVAGGQTRLQASDRYRDLAGG---TG
       :. .:::.  : .. . ..  :... .:. .:..:.  .:.:..  . :... .    : 
CCDS82 ASQYLKRDWPGVKADDRNDY-RSMYPVWKSFLEGTMQVAQSRMNICENYKNFISEPARTV
               70        80         90       100       110         

         120       130       140       150       160       170     
pF1KF0 RSAKEQVLRKGTENLQRAQAEVLQSVRELSRSRKLYGQRERVWALAQEKAADVQARLNRS
       :: ::: :.. ...: . :.:. ..:..:....: : . :..   ..::: :..:.   :
CCDS82 RSLKEQQLKRCVDQLTKIQTELQETVKDLAKGKKKYFETEQMAHAVREKA-DIEAK---S
     120       130       140       150       160        170        

         180       190       200       210       220       230     
pF1KF0 DHGIFHSRTSLQKLSTKLSAQSAQYSQQLQAARNEYLLNLVATNAHLDHYYQEELPALLK
         ..:.:: :::: :.::.:. .. ...   :::.:::.:.:.::: :.::: .:  ..:
CCDS82 KLSLFQSRISLQKASVKLKARRSECNSKATHARNDYLLTLAAANAHQDRYYQTDLVNIMK
         180       190       200       210       220       230     

         240       250       260       270       280       290     
pF1KF0 ALVSELSEHLRDPLTSLSHTELEAAEVILEHAHRGEQTTSQVSWEQDLKLFLQEPGVFSP
       :: ... .::.: : ..:.::::. ... .  .   ...:.:  . .:.::::: .::  
CCDS82 ALDGNVYDHLKDYLIAFSRTELETCQAVQNTFQFLLENSSKVVRDYNLQLFLQENAVFHK
         240       250       260       270       280       290     

         300       310       320       330       340       350     
pF1KF0 TPPQQFQPAGTDQVCVLEWGAEGVAGKSGLEKEVQRLTSRAARDYKIQNHGHRVLQRLEQ
         : ::::  .:    :: .  :.. . .:.::... ..:.::..:   : .:::. :: 
CCDS82 PQPFQFQPCDSDTSRQLE-SETGTTEEHSLNKEARKWATRVAREHKNIVHQQRVLNDLEC
         300       310        320       330       340       350    

         360       370       380       390       400       410     
pF1KF0 RRQQASEREAPSIEQRLQEVRESIRRAQVSQVKGAARLALLQGAGLDVERWLKPAMTQAQ
       .   .::.    .::...:.::.::.:.. ..:. ::: ::.  :..:. ::: ::.:..
CCDS82 HGAAVSEQSRAELEQKIDEARENIRKAEIIKLKAEARLDLLKQIGVSVDTWLKSAMNQVM
          360       370       380       390       400       410    

         420        430       440       450       460        470   
pF1KF0 DEVEQERRLSE-ARLSQRDLSPTAEDAELSDFEECEETGELFEEPAPQALAT-RALPCPA
       .:.:.::     :  :.  :     :.:  . :: :.. ..:.. . .  .: :  :   
CCDS82 EELENERWARPPAVTSNGTLHSLNADTEREEGEEFEDNMDVFDDSSSSPSGTLRNYPLTC
          420       430       440       450       460       470    

           480       490       500       510       520             
pF1KF0 HVVFRYQAGREDELTITEGEWLEVIEEGDADEWVKARNQHGEVGFVPERYLNFPD----L
       .::. :.:.. ::::: : : :::::.:: ..::::::. :.::.:::.::.::     :
CCDS82 KVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSNSLL
          480       490       500       510       520       530    

     530              540                550       560       570   
pF1KF0 SLPES-------SQDSDNPCGAE---------PTAFLAQALYSYTGQSAEELSFPEGALI
       :. .:       :. :.:   ::          .. ...:::.: ::. .::::::::.:
CCDS82 SMLQSLAALDSRSHTSSNSTEAELVSGSLNGDASVCFVKALYDYEGQTDDELSFPEGAII
          540       550       560       570       580       590    

            580       590       600       610        620       630 
pF1KF0 RLLPRA-QDGVDDGFWRGEFGGRVGVFPSLLVEELLGPP-GPPELSDPEQMLPSPSPPSF
       :.: .  ::  :::::.:::.::.:::::.::::: .   :        :. :::.: . 
CCDS82 RILNKENQD--DDGFWEGEFNGRIGVFPSVLVEELSASENGDTPWMREIQISPSPKPHAS
          600         610       620       630       640       650  

             640       650                         660             
pF1KF0 SPPAPTSVLDGPPAPVLPG-DK--ALDFP---------------GFLDM--MAP-----R
        :: :  . : ::.   :. ::  .: ::               :: .    .:     .
CCDS82 LPPLP--LYDQPPSSPYPSPDKRSSLYFPRSPSANEKSLHAESPGFSQASRHTPETSYGK
              660       670       680       690       700       710

        670       680       690      
pF1KF0 LRPMRPPPPPPAKAPDPGHPDPLT      
       :::.:  ::::                   
CCDS82 LRPVRAAPPPPTQNHRRPAEKIEDVEITLV
              720       730       740




690 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:33:44 2016 done: Sat Nov  5 06:33:44 2016
 Total Scan time:  4.260 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]