FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9656, 164 aa
  1>>>pF1KE9656     164 - 164 aa - 164 aa
Library: /omim/omim.rfq.tfa
  61573307 residues in 86401 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4326+/-0.000273; mu= 11.7805+/- 0.017
 mean_var=69.1534+/-13.555, 0's: 0 Z-trim(119.8): 4  B-trim: 7 in 2/51
 Lambda= 0.154229
 statistics sampled from 34400 (34404) to 34400 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.398), width:  16
 Scan time:  6.030

The best scores are:                                      opt bits E(86401)
NP_115569 (OMIM: 610329,610330) ribonuclease H2 su ( 164) 1115 256.2 1.8e-68


>>NP_115569 (OMIM: 610329,610330) ribonuclease H2 subuni  (164 aa)
 initn: 1115 init1: 1115 opt: 1115  Z-score: 1350.5  bits: 256.2 E(86401): 1.8e-68
Smith-Waterman score: 1115; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)

               10        20        30        40        50        60
pF1KE9 MESGDEAAIERHRVHLRSATLRDAVPATLHLLPCEVAVDGPAPVGRFFTPAIRQGPEGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MESGDEAAIERHRVHLRSATLRDAVPATLHLLPCEVAVDGPAPVGRFFTPAIRQGPEGLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 VSFRGRCLRGEEVAVPPGLVGYVMVTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDRFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 VSFRGRCLRGEEVAVPPGLVGYVMVTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDRFI
               70        80        90       100       110       120

              130       140       150       160    
pF1KE9 GATANFSRFTLWGLETIPGPDAKVRGALTWPSLAAAIHAQVPED
       ::::::::::::::::::::::::::::::::::::::::::::
NP_115 GATANFSRFTLWGLETIPGPDAKVRGALTWPSLAAAIHAQVPED
              130       140       150       160    




164 residues in 1 query   sequences
61573307 residues in 86401 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Mar 10 10:44:41 2017 done: Fri Mar 10 10:44:42 2017
 Total Scan time:  6.030 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]