FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9656, 164 aa
  1>>>pF1KE9656     164 - 164 aa - 164 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0812+/-0.000591; mu= 13.9506+/- 0.035
 mean_var=67.6820+/-13.487, 0's: 0 Z-trim(112.7): 2  B-trim: 703 in 1/50
 Lambda= 0.155897
 statistics sampled from 13413 (13414) to 13413 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.412), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS8111.1 RNASEH2C gene_id:84153|Hs108|chr11      ( 164) 1115 258.6 1.2e-69


>>CCDS8111.1 RNASEH2C gene_id:84153|Hs108|chr11           (164 aa)
 initn: 1115 init1: 1115 opt: 1115  Z-score: 1363.8  bits: 258.6 E(32554): 1.2e-69
Smith-Waterman score: 1115; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)

               10        20        30        40        50        60
pF1KE9 MESGDEAAIERHRVHLRSATLRDAVPATLHLLPCEVAVDGPAPVGRFFTPAIRQGPEGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MESGDEAAIERHRVHLRSATLRDAVPATLHLLPCEVAVDGPAPVGRFFTPAIRQGPEGLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 VSFRGRCLRGEEVAVPPGLVGYVMVTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDRFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VSFRGRCLRGEEVAVPPGLVGYVMVTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDRFI
               70        80        90       100       110       120

              130       140       150       160    
pF1KE9 GATANFSRFTLWGLETIPGPDAKVRGALTWPSLAAAIHAQVPED
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GATANFSRFTLWGLETIPGPDAKVRGALTWPSLAAAIHAQVPED
              130       140       150       160    




164 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Mar 10 10:44:40 2017 done: Fri Mar 10 10:44:41 2017
 Total Scan time:  2.030 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]