Result of FASTA (ccds) for
pF1KE9260
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9260, 1582 aa
1>>>pF1KE9260 1582 - 1582 aa - 1582 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3034+/-0.00125; mu= 8.5741+/- 0.076
mean_var=277.4263+/-54.675, 0's: 0 Z-trim(110.8): 51 B-trim: 109 in 1/49
Lambda= 0.077002
statistics sampled from 11879 (11908) to 11879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.366), width: 16
Scan time: 6.170
The best scores are: opt bits E(32554)
CCDS43099.1 PBRM1 gene_id:55193|Hs108|chr3 (1582) 7392 836.2 0
>>CCDS43099.1 PBRM1 gene_id:55193|Hs108|chr3 (1582 aa)
initn: 7103 init1: 7103 opt: 7392 Z-score: 4449.6 bits: 836.2 E(32554): 0
Smith-Waterman score: 9963; 93.6% identity (93.6% similar) in 1634 aa overlap (1-1582:1-1582)
10 20 30 40 50 60
pF1KE9 MGSKRRRATSPSSSVSGDFDDGHHSVSTPGPSRKRRRLSNLPTVDPIAVCHELYNTIRDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGSKRRRATSPSSSVSGDFDDGHHSVSTPGPSRKRRRLSNLPTVDPIAVCHELYNTIRDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 KDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADDEDDDEDGQDNQGTVTEGSSPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADDEDDDEDGQDNQGTVTEGSSPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEMAKSSLRMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEMAKSSLRMR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 TPSNLAAARLTGPSHSKGSLGEERNPTSKYYRNKRAVQGGRLSAITMALQYGSESEEDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TPSNLAAARLTGPSHSKGSLGEERNPTSKYYRNKRAVQGGRLSAITMALQYGSESEEDAA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 LAAARYEEGESEAESITSFMDVSNPFYQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LAAARYEEGESEAESITSFMDVSNPFYQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 YQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 QAKKKELARRDDIEDGDSMISSATSDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QAKKKELARRDDIEDGDSMISSATSDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE9 RLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHY
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE9 NEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMASPKLKLSRKSGISPKKSKYMTPMQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMASPKLKLSRKSGISPKKSKYMTPMQQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE9 KLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE9 IDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGDEDSHVPNVTLLIQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGDEDSHVPNVTLLIQE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE9 LIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNKPPLTFDIIRKNVENNRYRRLDLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNKPPLTFDIIRKNVENNRYRRLDLF
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE9 QEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALSYTTKHLHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALSYTTKHLHN
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE9 DVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRTYSQDCSFKNSMYHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRTYSQDCSFKNSMYHV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE9 GDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKS
:::::::::::::::::::::::::::: :::::::
CCDS43 GDYVYVEPAEANLQPHIVCIERLWEDSA-------------------------EKEVFKS
970 980 990
1030 1040 1050 1060 1070 1080
pF1KE9 DYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPI
1000 1010 1020 1030 1040 1050
1090 1100 1110 1120 1130 1140
pF1KE9 SSVRFVPRDVPLPVVRVASVFANADKGDDEKNTDNSEDSRAEDNFNLEKEKEDVPVEMSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSVRFVPRDVPLPVVRVASVFANADKGDDEKNTDNSEDSRAEDNFNLEKEKEDVPVEMSN
1060 1070 1080 1090 1100 1110
1150 1160 1170 1180 1190 1200
pF1KE9 GEPGCHYFEQLHYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVRDGAAYFYGPIFIHPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GEPGCHYFEQLHYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVRDGAAYFYGPIFIHPE
1120 1130 1140 1150 1160 1170
1210 1220 1230 1240 1250 1260
pF1KE9 ETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCAVLSFKDFLSCRPTEIPENDILLCESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCAVLSFKDFLSCRPTEIPENDILLCESR
1180 1190 1200 1210 1220 1230
1270 1280 1290 1300 1310 1320
pF1KE9 YNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIVPQKEPSPLLEKKIQLLEAKFAELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIVPQKEPSPLLEKKIQLLEAKFAELE
1240 1250 1260 1270 1280 1290
1330 1340 1350 1360 1370 1380
pF1KE9 GGDDDIEEMGEEDSEVIEPPSLPQLQTPLASELDLMPYTPPQSTPKSAKGSAKKEGSKRK
::::::::::::::: ::::::::::::::::::
CCDS43 GGDDDIEEMGEEDSE---------------------------STPKSAKGSAKKEGSKRK
1300 1310 1320
1390 1400 1410 1420 1430
pF1KE9 INMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEG----------
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 INMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEGMMGGYPPGLP
1330 1340 1350 1360 1370 1380
1440
pF1KE9 ------------------------------------------VMNQGVAPMVGTPAPGGS
::::::::::::::::::
CCDS43 PLQGPVDGLVSMGSMQPLHPGGPPPHHLPPGVPGLPGIPPPGVMNQGVAPMVGTPAPGGS
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KE9 PYGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPKTQRLLHSEAYLKYIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PYGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPKTQRLLHSEAYLKYIE
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KE9 GLSAESNSISKWDQTLAARRRDVHLSKEQESRLPSHWLKSKGAHTTMADALWRLRDLMLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GLSAESNSISKWDQTLAARRRDVHLSKEQESRLPSHWLKSKGAHTTMADALWRLRDLMLR
1510 1520 1530 1540 1550 1560
1570 1580
pF1KE9 DTLNIRQAYNLENV
::::::::::::::
CCDS43 DTLNIRQAYNLENV
1570 1580
1582 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Feb 10 14:59:42 2017 done: Fri Feb 10 14:59:43 2017
Total Scan time: 6.170 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]