FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE8021, 741 aa
  1>>>pF1KE8021 741 - 741 aa - 741 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7798+/-0.000854; mu= 13.7788+/- 0.051
 mean_var=129.0872+/-25.555, 0's: 0 Z-trim(110.6): 36  B-trim: 106 in 1/53
 Lambda= 0.112884
 statistics sampled from 11744 (11759) to 11744 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.361), width:  16
 Scan time:  3.830

The best scores are:                                      opt bits E(32554)
CCDS11070.1 NUP88 gene_id:4927|Hs108|chr17         ( 741) 4988 824.2       0


>>CCDS11070.1 NUP88 gene_id:4927|Hs108|chr17              (741 aa)
 initn: 4988 init1: 4988 opt: 4988  Z-score: 4396.6  bits: 824.2 E(32554):    0
Smith-Waterman score: 4988; 100.0% identity (100.0% similar) in 741 aa overlap (1-741:1-741)

               10        20        30        40        50        60
pF1KE8 MAAAEGPVGDGELWQTWLPNHVVFLRLREGLKNQSPTEAEKPASSSLPSSPPPQLLTRNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAAEGPVGDGELWQTWLPNHVVFLRLREGLKNQSPTEAEKPASSSLPSSPPPQLLTRNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE8 VFGLGGELFLWDGEDSSFLVVRLRGPSGGGEEPALSQYQRLLCINPPLFEIYQVLLSPTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VFGLGGELFLWDGEDSSFLVVRLRGPSGGGEEPALSQYQRLLCINPPLFEIYQVLLSPTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE8 HHVALIGIKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPVAERFFTSSTSLTLKHAAWYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HHVALIGIKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPVAERFFTSSTSLTLKHAAWYP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE8 SEILDPHVVLLTSDNVIRIYSLREPQTPTNVIILSEAEEESLVLNKGRAYTASLGETAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SEILDPHVVLLTSDNVIRIYSLREPQTPTNVIILSEAEEESLVLNKGRAYTASLGETAVA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE8 FDFGPLAAVPKTLFGQNGKDEVVAYPLYILYENGETFLTYISLLHSPGNIGKLLGPLPMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FDFGPLAAVPKTLFGQNGKDEVVAYPLYILYENGETFLTYISLLHSPGNIGKLLGPLPMH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE8 PAAEDNYGYDACAVLCLPCVPNILVIATESGMLYHCVVLEGEEEDDHTSEKSWDSRIDLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PAAEDNYGYDACAVLCLPCVPNILVIATESGMLYHCVVLEGEEEDDHTSEKSWDSRIDLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE8 PSLYVFECVELELALKLASGEDDPFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PSLYVFECVELELALKLASGEDDPFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE8 IHKLHKFLGSDEEDKDSLQELSTEQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IHKLHKFLGSDEEDKDSLQELSTEQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTM
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE8 ICITSTYECLIWPLLSTVHPASPPLLCTREDVEVAESPLRVLAETPDSFEKHIRSILQRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ICITSTYECLIWPLLSTVHPASPPLLCTREDVEVAESPLRVLAETPDSFEKHIRSILQRS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE8 VANPAFLKASEKDIAPPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLLCDQKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VANPAFLKASEKDIAPPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLLCDQKKK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE8 QLEDLSYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLEDLSYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE8 MKKELQLIPDQLRHLGNAIKQVTMKKDYQQQKMEKVLSLPKPTIILSAYQRKCIQSILKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKKELQLIPDQLRHLGNAIKQVTMKKDYQQQKMEKVLSLPKPTIILSAYQRKCIQSILKE
              670       680       690       700       710       720

              730       740 
pF1KE8 EGEHIREMVKQINDIRNHVNF
       :::::::::::::::::::::
CCDS11 EGEHIREMVKQINDIRNHVNF
              730       740 




741 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:19:33 2016 done: Tue Nov  8 03:19:34 2016
 Total Scan time:  3.830 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]