Result of FASTA (omim) for
pF1KE6677
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6677, 297 aa
1>>>pF1KE6677 297 - 297 aa - 297 aa
Library: /omim/omim.rfq.tfa
65089639 residues in 91964 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2137+/-0.000337; mu= 11.9950+/- 0.021
mean_var=95.8239+/-19.523, 0's: 0 Z-trim(117.0): 76 B-trim: 1079 in 2/54
Lambda= 0.131020
statistics sampled from 29584 (29664) to 29584 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.323), width: 16
Scan time: 3.740
The best scores are: opt bits E(91964)
NP_001341416 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341424 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_024302959 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_024302960 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_060841 (OMIM: 616615) chondroitin sulfate N-ace ( 532) 1846 359.0 1.2e-98
XP_024302961 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341425 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_011542880 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_011542881 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_016869112 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_006716423 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_016869113 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001123990 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341417 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341410 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341409 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_024302958 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_016869114 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_006716427 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_011542885 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_011542886 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_016869116 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_024302962 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341428 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341426 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341418 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341405 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341427 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341406 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341423 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_006716426 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341413 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_016869127 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341420 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_016869117 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341421 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341412 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341414 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341404 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
NP_001341419 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_016869118 (OMIM: 616615) chondroitin sulfate N- ( 532) 1846 359.0 1.2e-98
XP_016871880 (OMIM: 616616) chondroitin sulfate N- ( 300) 650 132.8 8.6e-31
XP_016871878 (OMIM: 616616) chondroitin sulfate N- ( 342) 650 132.8 9.6e-31
NP_001306585 (OMIM: 616616) chondroitin sulfate N- ( 342) 650 132.8 9.6e-31
NP_001306583 (OMIM: 616616) chondroitin sulfate N- ( 416) 650 132.9 1.1e-30
XP_016871877 (OMIM: 616616) chondroitin sulfate N- ( 416) 650 132.9 1.1e-30
XP_011538240 (OMIM: 616616) chondroitin sulfate N- ( 448) 650 132.9 1.2e-30
NP_061060 (OMIM: 616616) chondroitin sulfate N-ace ( 542) 650 133.0 1.4e-30
XP_011542887 (OMIM: 616615) chondroitin sulfate N- ( 284) 224 52.3 1.4e-06
>>NP_001341416 (OMIM: 616615) chondroitin sulfate N-acet (532 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 1892.5 bits: 359.0 E(91964): 1.2e-98
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP
:::::::::::.::::::::::::::::::::::::::::::::
NP_001 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
250 260 270 280 290 300
NP_001 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
310 320 330 340 350 360
>>NP_001341424 (OMIM: 616615) chondroitin sulfate N-acet (532 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 1892.5 bits: 359.0 E(91964): 1.2e-98
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP
:::::::::::.::::::::::::::::::::::::::::::::
NP_001 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
250 260 270 280 290 300
NP_001 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
310 320 330 340 350 360
>>XP_024302959 (OMIM: 616615) chondroitin sulfate N-acet (532 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 1892.5 bits: 359.0 E(91964): 1.2e-98
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_024 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP
:::::::::::.::::::::::::::::::::::::::::::::
XP_024 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
250 260 270 280 290 300
XP_024 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
310 320 330 340 350 360
>>XP_024302960 (OMIM: 616615) chondroitin sulfate N-acet (532 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 1892.5 bits: 359.0 E(91964): 1.2e-98
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_024 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP
:::::::::::.::::::::::::::::::::::::::::::::
XP_024 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
250 260 270 280 290 300
XP_024 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
310 320 330 340 350 360
>>NP_060841 (OMIM: 616615) chondroitin sulfate N-acetylg (532 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 1892.5 bits: 359.0 E(91964): 1.2e-98
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP
:::::::::::.::::::::::::::::::::::::::::::::
NP_060 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
250 260 270 280 290 300
NP_060 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
310 320 330 340 350 360
>>XP_024302961 (OMIM: 616615) chondroitin sulfate N-acet (532 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 1892.5 bits: 359.0 E(91964): 1.2e-98
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_024 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP
:::::::::::.::::::::::::::::::::::::::::::::
XP_024 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
250 260 270 280 290 300
XP_024 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
310 320 330 340 350 360
>>NP_001341425 (OMIM: 616615) chondroitin sulfate N-acet (532 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 1892.5 bits: 359.0 E(91964): 1.2e-98
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP
:::::::::::.::::::::::::::::::::::::::::::::
NP_001 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
250 260 270 280 290 300
NP_001 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
310 320 330 340 350 360
>>XP_011542880 (OMIM: 616615) chondroitin sulfate N-acet (532 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 1892.5 bits: 359.0 E(91964): 1.2e-98
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP
:::::::::::.::::::::::::::::::::::::::::::::
XP_011 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
250 260 270 280 290 300
XP_011 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
310 320 330 340 350 360
>>XP_011542881 (OMIM: 616615) chondroitin sulfate N-acet (532 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 1892.5 bits: 359.0 E(91964): 1.2e-98
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP
:::::::::::.::::::::::::::::::::::::::::::::
XP_011 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
250 260 270 280 290 300
XP_011 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
310 320 330 340 350 360
>>XP_016869112 (OMIM: 616615) chondroitin sulfate N-acet (532 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 1892.5 bits: 359.0 E(91964): 1.2e-98
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP
:::::::::::.::::::::::::::::::::::::::::::::
XP_016 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
250 260 270 280 290 300
XP_016 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
310 320 330 340 350 360
297 residues in 1 query sequences
65089639 residues in 91964 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Oct 17 20:10:27 2018 done: Wed Oct 17 20:10:28 2018
Total Scan time: 3.740 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]