FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6677, 297 aa
  1>>>pF1KE6677     297 - 297 aa - 297 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5861+/-0.000807; mu= 9.5210+/- 0.048
 mean_var=94.5807+/-18.591, 0's: 0 Z-trim(109.5): 13  B-trim: 0 in 0/53
 Lambda= 0.131878
 statistics sampled from 11055 (11062) to 11055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.331), width:  16
 Scan time:  1.330

The best scores are:                                      opt bits E(33420)
CCDS6010.1 CSGALNACT1 gene_id:55790|Hs109|chr8     ( 532) 1846 361.2 9.5e-100
CCDS7201.1 CSGALNACT2 gene_id:55454|Hs109|chr10    ( 542)  650 133.7 3.1e-31


>>CCDS6010.1 CSGALNACT1 gene_id:55790|Hs109|chr8          (532 aa)
 initn: 1846 init1: 1846 opt: 1846  Z-score: 1904.5  bits: 361.2 E(33420): 9.5e-100
Smith-Waterman score: 1846; 99.3% identity (100.0% similar) in 284 aa overlap (1-284:1-284)

               10        20        30        40        50        60
pF1KE6 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHEFKRLI
              190       200       210       220       230       240

              250       260       270       280       290          
pF1KE6 LFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPADEVFRCVPLSP   
       :::::::::::.::::::::::::::::::::::::::::::::                
CCDS60 LFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY
              250       260       270       280       290       300

CCDS60 FGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVD
              310       320       330       340       350       360

>>CCDS7201.1 CSGALNACT2 gene_id:55454|Hs109|chr10         (542 aa)
 initn: 940 init1: 623 opt: 650  Z-score: 674.6  bits: 133.7 E(33420): 3.1e-31
Smith-Waterman score: 947; 52.9% identity (76.9% similar) in 295 aa overlap (3-284:1-293)

               10          20        30        40        50        
pF1KE6 MMMVRRGLLAWISRVVVLL--VLLCCAISVLYMLACTPKGDEEQLALPRANSPT-GKEGY
         : ::::.       .::  .:::  .  .:.: :.:. : .  .:: . . . ::: :
CCDS72   MPRRGLILHTRTHWLLLGLALLCSLVLFMYLLECAPQTDGNA-SLPGVVGENYGKEYY
                 10        20        30        40         50       

        60        70        80        90       100        110      
pF1KE6 QAVLQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQAS-DAAGLGLDRSPPEKT
       ::.::: ::.... ..::::::::::.:::: ::..:. : . .  : :.:  .:  :..
CCDS72 QALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGY-QSNKEQA
        60        70        80        90       100        110      

        120       130       140       150       160       170      
pF1KE6 QADLLAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDK
        .::: :::::.:::::. :.:: .::...::.::::.::.::: :::::::::::::::
CCDS72 PSDLLEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDK
        120       130       140       150       160       170      

        180       190       200                210       220       
pF1KE6 RDELVEAIESALETLNNPAENSPNHR---P------YTASDFIEGIYRTERDKGTLYELT
       ::::::.::..::..::: :.. ..    :      .. .::.:: ::::::::: ::: 
CCDS72 RDELVEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELF
        180       190       200       210       220       230      

       230       240       250       260       270       280       
pF1KE6 FKGDHKHEFKRLILFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKFRQFMQNFRPAD
       ::     :.... :::::::.:::..: .... ..::.:::::.:.. : :::::::   
CCDS72 FKKADLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIVPLAERTEAFVQFMQNFRDVC
        240       250       260       270       280       290      

       290                                                         
pF1KE6 EVFRCVPLSP                                                  
                                                                   
CCDS72 IHQDKKIHLTVVYFGKEGLSKVKSILESVTSESNFHNYTLVSLNEEFNRGRGLNVGARAW
        300       310       320       330       340       350      




297 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Oct 17 20:10:26 2018 done: Wed Oct 17 20:10:27 2018
 Total Scan time:  1.330 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]