FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6626, 314 aa
  1>>>pF1KE6626     314 - 314 aa - 314 aa
Library: /omim/omim.rfq.tfa
  65951994 residues in 93482 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7986+/-0.000417; mu= -1.9450+/- 0.026
 mean_var=369.6028+/-76.191, 0's: 0 Z-trim(122.5): 20  B-trim: 2295 in 2/58
 Lambda= 0.066712
 statistics sampled from 42671 (42701) to 42671 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.457), width:  16
 Scan time:  4.250

The best scores are:                                      opt bits E(93482)
NP_076424 (OMIM: 602557,616177) DDRGK domain-conta ( 314) 1986 204.5 2.6e-52


>>NP_076424 (OMIM: 602557,616177) DDRGK domain-containin  (314 aa)
 initn: 1986 init1: 1986 opt: 1986  Z-score: 1060.8  bits: 204.5 E(93482): 2.6e-52
Smith-Waterman score: 1986; 99.7% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KE6 MVAPVWYLVAAALLVGFILFLTRSRGRAASAGQEPLHNEELAGAGRVAQPGPLEPEEPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MVAPVWYLVAAALLVGFILFLTRSRGRAASAGQEPLHNEELAGAGRVAQPGPLEPEEPRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GGRPRRRRDLGSRLQAQRRAQRVAWAEADENEEEAVILAQEEEGVEKPAETHLSGKIGAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 GGRPRRRRDLGSRLQAQRRAQRVAWAEADENEEEAVILAQEEEGVEKPAETHLSGKIGAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KLRKLEEKQARKAQREAEEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERKAREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 KLRKLEEKQARKAQREAEEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERKAREE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QAQREHEEYLKLKEAFVVEEEGVGETMTEEQSQSFLTEFINYIKQSKVVLLEDLASQVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 QAQREHEEYLKLKEAFVVEEEGVGETMTEEQSQSFLTEFINYIKQSKVVLLEDLASQVGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 RTQDTINRIQDLLAEGTITGVIDDRGKFIYITPEELAAVANFIRQRGRVSIAELAQASNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 RTQDTINRIQDLLAEGTITGVIDDRGKFIYITPEELAAVANFIRQRGRVSIAELAQASNS
              250       260       270       280       290       300

              310    
pF1KE6 LITWGRESPAQAPA
       ::.:::::::::::
NP_076 LIAWGRESPAQAPA
              310    




314 residues in 1 query   sequences
65951994 residues in 93482 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Jun 20 10:37:05 2019 done: Thu Jun 20 10:37:05 2019
 Total Scan time:  4.250 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]