FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6622, 306 aa
  1>>>pF1KE6622     306 - 306 aa - 306 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7740+/-0.000876; mu= 2.1884+/- 0.053
 mean_var=245.1068+/-49.573, 0's: 0 Z-trim(114.2): 15  B-trim: 0 in 0/54
 Lambda= 0.081921
 statistics sampled from 14972 (14978) to 14972 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.448), width:  16
 Scan time:  1.320

The best scores are:                                      opt bits E(33420)
CCDS33913.1 CCDC50 gene_id:152137|Hs109|chr3       ( 306) 2016 250.6 1.2e-66
CCDS33912.1 CCDC50 gene_id:152137|Hs109|chr3       ( 482) 1098 142.3 7.4e-34


>>CCDS33913.1 CCDC50 gene_id:152137|Hs109|chr3            (306 aa)
 initn: 2016 init1: 2016 opt: 2016  Z-score: 1310.5  bits: 250.6 E(33420): 1.2e-66
Smith-Waterman score: 2016; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KE6 MAEVSIDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNVQRNRLVQHDLQVAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAEVSIDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNVQRNRLVQHDLQVAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QLQEEDLKAQAQLQKRYKDLEQQDCEIAQEIQEKLAIEAERRRIQEKKDEDIARLLQEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QLQEEDLKAQAQLQKRYKDLEQQDCEIAQEIQEKLAIEAERRRIQEKKDEDIARLLQEKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LQEEKKRKKHFPEFPATRAYADSYYYEDGGMKPRVMKEAVSTPSRMAHRDQEWYDAEIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LQEEKKRKKHFPEFPATRAYADSYYYEDGGMKPRVMKEAVSTPSRMAHRDQEWYDAEIAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KLQEEELLATQVDMRAAQVAQDEEIARLLMAEEKKAYKKAKEREKSSLDKRKQDPEWKPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KLQEEELLATQVDMRAAQVAQDEEIARLLMAEEKKAYKKAKEREKSSLDKRKQDPEWKPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 TAKAANSKSKESDEPHHSKNERPARPPPPIMTDGEDADYTHFTNQQSSTRHFSKSESSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TAKAANSKSKESDEPHHSKNERPARPPPPIMTDGEDADYTHFTNQQSSTRHFSKSESSHK
              250       260       270       280       290       300

             
pF1KE6 GFHYKH
       ::::::
CCDS33 GFHYKH
             

>>CCDS33912.1 CCDC50 gene_id:152137|Hs109|chr3            (482 aa)
 initn: 1059 init1: 1059 opt: 1098  Z-score: 721.6  bits: 142.3 E(33420): 7.4e-34
Smith-Waterman score: 1098; 88.1% identity (94.1% similar) in 185 aa overlap (122-306:298-482)

             100       110       120       130       140       150 
pF1KE6 QEKLAIEAERRRIQEKKDEDIARLLQEKELQEEKKRKKHFPEFPATRAYADSYYYEDGGM
                                     : :.....: :. :      .. . .:.::
CCDS33 QSRHQDRLSPKSSQKAGLHCKEVVYGRDHGQGEHRKRRHRPRTPPFSESEEQLHLHDAGM
       270       280       290       300       310       320       

             160       170       180       190       200       210 
pF1KE6 KPRVMKEAVSTPSRMAHRDQEWYDAEIARKLQEEELLATQVDMRAAQVAQDEEIARLLMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KPRVMKEAVSTPSRMAHRDQEWYDAEIARKLQEEELLATQVDMRAAQVAQDEEIARLLMA
       330       340       350       360       370       380       

             220       230       240       250       260       270 
pF1KE6 EEKKAYKKAKEREKSSLDKRKQDPEWKPKTAKAANSKSKESDEPHHSKNERPARPPPPIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EEKKAYKKAKEREKSSLDKRKQDPEWKPKTAKAANSKSKESDEPHHSKNERPARPPPPIM
       390       400       410       420       430       440       

             280       290       300      
pF1KE6 TDGEDADYTHFTNQQSSTRHFSKSESSHKGFHYKH
       :::::::::::::::::::::::::::::::::::
CCDS33 TDGEDADYTHFTNQQSSTRHFSKSESSHKGFHYKH
       450       460       470       480  

>--
 initn: 1004 init1: 967 opt: 980  Z-score: 646.2  bits: 128.3 E(33420): 1.2e-29
Smith-Waterman score: 989; 56.8% identity (70.2% similar) in 322 aa overlap (1-305:1-288)

               10        20        30        40        50        60
pF1KE6 MAEVSIDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNVQRNRLVQHDLQVAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAEVSIDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNVQRNRLVQHDLQVAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QLQEEDLKAQAQLQKRYKDLEQQDCEIAQEIQEKLAIEAERRRIQEKKDEDIARLLQEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QLQEEDLKAQAQLQKRYKDLEQQDCEIAQEIQEKLAIEAERRRIQEKKDEDIARLLQEKE
               70        80        90       100       110       120

              130       140       150           160       170      
pF1KE6 LQEEKKRKKHFPEFPATRAYADSYYYEDGGM----KPRVMKEAVSTPSRMAHRDQEWYDA
       ::::::::::::::::::::::::::::: .    . : .  . : : :.          
CCDS33 LQEEKKRKKHFPEFPATRAYADSYYYEDGDQPGSRRARELGSGFSRPCRL----------
              130       140       150       160       170          

        180       190       200       210       220       230      
pF1KE6 EIARKLQEEELLATQVDMRAAQVAQDEEIARLLMAEEKKAYKKAKEREKSSLDKRKQDPE
                     : : ....  ...    :   :: . . ..:.  .:: . . .:  
CCDS33 --------------QRDGKTVKHKKEKPEHPLENLEEPEQHCSSKRSLSSSSSGKGRD--
                            180       190       200       210      

        240       250       260       270                280       
pF1KE6 WKPKTAKAANSKSKESDEPHHSKNERPARPPPPIMT---------DGEDADYTHFT-NQQ
        .:.        ..:. : ..: .::: ::  : ..         :  ..  .: : : .
CCDS33 -NPHI-------NNEQHERKRSTQERPRRPLLPTISGEVFLSTECDDWETKINHQTRNWE
                  220       230       240       250       260      

        290          300                                           
pF1KE6 SSTRH---FSKSESSHKGFHYKH                                     
       ...::   .: . :.. :.: :                                      
CCDS33 KQSRHQDRLSPKSSQKAGLHCKEVVYGRDHGQGEHRKRRHRPRTPPFSESEEQLHLHDAG
        270       280       290       300       310       320      




306 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:51:53 2019 done: Thu Oct 24 21:51:53 2019
 Total Scan time:  1.320 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]