FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5152, 87 aa
  1>>>pF1KE5152 87 - 87 aa - 87 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6085+/-0.000475; mu= 12.4042+/- 0.029
 mean_var=52.6741+/-10.354, 0's: 0 Z-trim(115.1): 16  B-trim: 48 in 1/50
 Lambda= 0.176716
 statistics sampled from 15667 (15683) to 15667 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.482), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS12442.1 FXYD3 gene_id:5349|Hs108|chr19         (  87)  608 161.4 6.5e-41
CCDS46048.1 FXYD3 gene_id:5349|Hs108|chr19         ( 144)  608 161.5 9.8e-41
CCDS46049.1 FXYD3 gene_id:5349|Hs108|chr19         (  96)  412 111.4 7.8e-26
CCDS12443.1 FXYD3 gene_id:5349|Hs108|chr19         ( 113)  412 111.5 8.9e-26
CCDS7203.1 FXYD4 gene_id:53828|Hs108|chr10         (  89)  302 83.4   2e-17


>>CCDS12442.1 FXYD3 gene_id:5349|Hs108|chr19              (87 aa)
 initn: 608 init1: 608 opt: 608  Z-score: 848.0  bits: 161.4 E(32554): 6.5e-41
Smith-Waterman score: 608; 100.0% identity (100.0% similar) in 87 aa overlap (1-87:1-87)

               10        20        30        40        50        60
pF1KE5 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK
               10        20        30        40        50        60

               70        80       
pF1KE5 CKCKFGQKSGHHPGETPPLITPGSAQS
       :::::::::::::::::::::::::::
CCDS12 CKCKFGQKSGHHPGETPPLITPGSAQS
               70        80       

>>CCDS46048.1 FXYD3 gene_id:5349|Hs108|chr19              (144 aa)
 initn: 608 init1: 608 opt: 608  Z-score: 844.8  bits: 161.5 E(32554): 9.8e-41
Smith-Waterman score: 608; 100.0% identity (100.0% similar) in 87 aa overlap (1-87:58-144)

                                             10        20        30
pF1KE5                               MQKVTLGLLVFLAGFPVLDANDLEDKNSPF
                                     ::::::::::::::::::::::::::::::
CCDS46 FTQSPLHGAAAAYLSAQRDASLPVPGQRSDMQKVTLGLLVFLAGFPVLDANDLEDKNSPF
        30        40        50        60        70        80       

               40        50        60        70        80       
pF1KE5 YYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQKSGHHPGETPPLITPGSAQS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQKSGHHPGETPPLITPGSAQS
        90       100       110       120       130       140    

>>CCDS46049.1 FXYD3 gene_id:5349|Hs108|chr19              (96 aa)
 initn: 470 init1: 393 opt: 412  Z-score: 577.3  bits: 111.4 E(32554): 7.8e-26
Smith-Waterman score: 422; 72.9% identity (72.9% similar) in 96 aa overlap (1-70:1-96)

               10        20        30        40        50          
pF1KE5 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS--
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS46 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSEW
               10        20        30        40        50        60

                               60        70        80       
pF1KE5 ------------------------AKCKCKFGQKSGHHPGETPPLITPGSAQS
                               ::::::::::::                 
CCDS46 RSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQKSG                 
               70        80        90                       

>>CCDS12443.1 FXYD3 gene_id:5349|Hs108|chr19              (113 aa)
 initn: 594 init1: 393 opt: 412  Z-score: 576.3  bits: 111.5 E(32554): 8.9e-26
Smith-Waterman score: 546; 77.0% identity (77.0% similar) in 113 aa overlap (1-87:1-113)

               10        20        30        40        50          
pF1KE5 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS--
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS12 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSEW
               10        20        30        40        50        60

                               60        70        80       
pF1KE5 ------------------------AKCKCKFGQKSGHHPGETPPLITPGSAQS
                               :::::::::::::::::::::::::::::
CCDS12 RSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQKSGHHPGETPPLITPGSAQS
               70        80        90       100       110   

>>CCDS7203.1 FXYD4 gene_id:53828|Hs108|chr10              (89 aa)
 initn: 267 init1: 227 opt: 302  Z-score: 426.2  bits: 83.4 E(32554): 2e-17
Smith-Waterman score: 302; 54.4% identity (81.1% similar) in 90 aa overlap (1-87:1-88)

               10        20         30        40        50         
pF1KE5 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSA
       :..:::.::. :::. .:.::: . .:..::::::..::..::::.:.:   ::  :.:.
CCDS72 MERVTLALLL-LAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSG
               10         20        30        40        50         

      60        70          80        
pF1KE5 KCKCKFGQKSGHHP--GETPPLITPGSAQS 
       ::::: .::. : :   .. :::::::: . 
CCDS72 KCKCKSSQKQ-HSPVPEKAIPLITPGSATTC
      60         70        80         




87 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:00:56 2016 done: Mon Nov  7 22:00:57 2016
 Total Scan time:  1.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]