FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4379, 399 aa
  1>>>pF1KE4379 399 - 399 aa - 399 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2659+/-0.00113; mu= 7.8766+/- 0.068
 mean_var=120.4542+/-23.623, 0's: 0 Z-trim(106.6): 53  B-trim: 443 in 2/48
 Lambda= 0.116859
 statistics sampled from 9044 (9079) to 9044 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.279), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS884.1 CASQ2 gene_id:845|Hs108|chr1             ( 399) 2657 459.2 2.9e-129
CCDS1198.2 CASQ1 gene_id:844|Hs108|chr1            ( 396) 1797 314.3 1.3e-85


>>CCDS884.1 CASQ2 gene_id:845|Hs108|chr1                  (399 aa)
 initn: 2657 init1: 2657 opt: 2657  Z-score: 2434.1  bits: 459.2 E(32554): 2.9e-129
Smith-Waterman score: 2657; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KE4 MKRTHLFIVGIYFLSSCRAEEGLNFPTYDGKDRVVSLSEKNFKQVLKKYDLLCLYYHEPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MKRTHLFIVGIYFLSSCRAEEGLNFPTYDGKDRVVSLSEKNFKQVLKKYDLLCLYYHEPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 SSDKVTQKQFQLKEIVLELVAQVLEHKAIGFVMVDAKKEAKLAKKLGFDEEGSLYILKGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 SSDKVTQKQFQLKEIVLELVAQVLEHKAIGFVMVDAKKEAKLAKKLGFDEEGSLYILKGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 RTIEFDGEFAADVLVEFLLDLIEDPVEIISSKLEVQAFERIEDYIKLIGFFKSEDSEYYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 RTIEFDGEFAADVLVEFLLDLIEDPVEIISSKLEVQAFERIEDYIKLIGFFKSEDSEYYK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 AFEEAAEHFQPYIKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPNKPYTEEELVEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 AFEEAAEHFQPYIKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPNKPYTEEELVEF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VKEHQRPTLRRLRPEEMFETWEDDLNGIHIVAFAEKSDPDGYEFLEILKQVARDNTDNPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 VKEHQRPTLRRLRPEEMFETWEDDLNGIHIVAFAEKSDPDGYEFLEILKQVARDNTDNPD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LSILWIDPDDFPLLVAYWEKTFKIDLFRPQIGVVNVTDADSVWMEIPDDDDLPTAEELED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LSILWIDPDDFPLLVAYWEKTFKIDLFRPQIGVVNVTDADSVWMEIPDDDDLPTAEELED
              310       320       330       340       350       360

              370       380       390         
pF1KE4 WIEDVLSGKINTEDDDEDDDDDDNSDEEDNDDSDDDDDE
       :::::::::::::::::::::::::::::::::::::::
CCDS88 WIEDVLSGKINTEDDDEDDDDDDNSDEEDNDDSDDDDDE
              370       380       390         

>>CCDS1198.2 CASQ1 gene_id:844|Hs108|chr1                 (396 aa)
 initn: 1797 init1: 1797 opt: 1797  Z-score: 1650.5  bits: 314.3 E(32554): 1.3e-85
Smith-Waterman score: 1797; 68.4% identity (91.3% similar) in 367 aa overlap (15-381:30-396)

                              10        20        30        40     
pF1KE4                MKRTHLFIVGIYFLSSCRAEEGLNFPTYDGKDRVVSLSEKNFKQV
                                    :. ...:::.:: ::: :::.... ::.:.:
CCDS11 MSATDRMGPRAVPGLRLALLLLLVLGTPKSGVQGQEGLDFPEYDGVDRVINVNAKNYKNV
               10        20        30        40        50        60

          50        60        70        80        90       100     
pF1KE4 LKKYDLLCLYYHEPVSSDKVTQKQFQLKEIVLELVAQVLEHKAIGFVMVDAKKEAKLAKK
       .:::..: : ::::  .::..:.::...:..:::.::::: :..:: .::..:.: .:::
CCDS11 FKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKK
               70        80        90       100       110       120

         110       120       130       140       150       160     
pF1KE4 LGFDEEGSLYILKGDRTIEFDGEFAADVLVEFLLDLIEDPVEIISSKLEVQAFERIEDYI
       ::. :  :.:..:::..::.::::.::..::::::..:::::.: .. :.:::: ::: :
CCDS11 LGLTEVDSMYVFKGDEVIEYDGEFSADTIVEFLLDVLEDPVELIEGERELQAFENIEDEI
              130       140       150       160       170       180

         170       180       190       200       210       220     
pF1KE4 KLIGFFKSEDSEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPI
       ::::.:::.:::.:::::.:::.:.::: ::::::. :::::.::.::.:::: ::.::.
CCDS11 KLIGYFKSKDSEHYKAFEDAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPV
              190       200       210       220       230       240

         230       240       250       260       270       280     
pF1KE4 AIPNKPYTEEELVEFVKEHQRPTLRRLRPEEMFETWEDDLNGIHIVAFAEKSDPDGYEFL
       .::.:: .:::.:.::.::.: :::.:.:: :.::::::..:::::::::..::::.:::
CCDS11 TIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGFEFL
              250       260       270       280       290       300

         290       300       310       320       330       340     
pF1KE4 EILKQVARDNTDNPDLSILWIDPDDFPLLVAYWEKTFKIDLFRPQIGVVNVTDADSVWME
       : :: ::.:::.::::::.::::::::::: :::::: :::  :::::::::::::::::
CCDS11 ETLKAVAQDNTENPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWME
              310       320       330       340       350       360

         350       360       370       380       390         
pF1KE4 IPDDDDLPTAEELEDWIEDVLSGKINTEDDDEDDDDDDNSDEEDNDDSDDDDDE
       . :..:::.:::::::.:::: :.:::::::.::::                  
CCDS11 MDDEEDLPSAEELEDWLEDVLEGEINTEDDDDDDDD                  
              370       380       390                        




399 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:01:08 2016 done: Sat Nov  5 23:01:09 2016
 Total Scan time:  2.520 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]