Result of FASTA (ccds) for
pF1KE4294
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4294, 2015 aa
1>>>pF1KE4294 2015 - 2015 aa - 2015 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.6074+/-0.00149; mu= -16.2231+/- 0.086
mean_var=571.1714+/-126.371, 0's: 0 Z-trim(107.6): 342 B-trim: 0 in 0/53
Lambda= 0.053665
statistics sampled from 9488 (9786) to 9488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.293), width: 16
Scan time: 3.370
The best scores are: opt bits E(33420)
CCDS42086.1 LRRK1 gene_id:79705|Hs109|chr15 (2015) 13560 1067.6 0
>>CCDS42086.1 LRRK1 gene_id:79705|Hs109|chr15 (2015 aa)
initn: 13560 init1: 13560 opt: 13560 Z-score: 5696.9 bits: 1067.6 E(33420): 0
Smith-Waterman score: 13560; 100.0% identity (100.0% similar) in 2015 aa overlap (1-2015:1-2015)
10 20 30 40 50 60
pF1KE4 MAGMSQRPPSMYWCVGPEESAVCPERAMETLNGAGDTGGKPSTRGGDPAARSRRTEGIRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAGMSQRPPSMYWCVGPEESAVCPERAMETLNGAGDTGGKPSTRGGDPAARSRRTEGIRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 AYRRGDRGGARDLLEEACDQCASQLEKGQLLSIPAAYGDLEMVRYLLSKRLVELPTEPTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AYRRGDRGGARDLLEEACDQCASQLEKGQLLSIPAAYGDLEMVRYLLSKRLVELPTEPTD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 DNPAVVAAYFGHTAVVQELLESLPGPCSPQRLLNWMLALACQRGHLGVVKLLVLTHGADP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DNPAVVAAYFGHTAVVQELLESLPGPCSPQRLLNWMLALACQRGHLGVVKLLVLTHGADP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ESYAVRKNEFPVIVRLPLYAAIKSGNEDIAIFLLRHGAYFCSYILLDSPDPSKHLLRKYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ESYAVRKNEFPVIVRLPLYAAIKSGNEDIAIFLLRHGAYFCSYILLDSPDPSKHLLRKYF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IEASPLPSSYPGKTALRVKWSHLRLPWVDLDWLIDISCQITELDLSANCLATLPSVIPWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IEASPLPSSYPGKTALRVKWSHLRLPWVDLDWLIDISCQITELDLSANCLATLPSVIPWG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 LINLRKLNLSDNHLGELPGVQSSDEIICSRLLEIDISSNKLSHLPPGFLHLSKLQKLTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LINLRKLNLSDNHLGELPGVQSSDEIICSRLLEIDISSNKLSHLPPGFLHLSKLQKLTAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 KNCLEKLFEEENATNWIGLRKLQELDISDNKLTELPALFLHSFKSLNSLNVSRNNLKVFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KNCLEKLFEEENATNWIGLRKLQELDISDNKLTELPALFLHSFKSLNSLNVSRNNLKVFP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 DPWACPLKCCKASRNALECLPDKMAVFWKNHLKDVDFSENALKEVPLGLFQLDALMFLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DPWACPLKCCKASRNALECLPDKMAVFWKNHLKDVDFSENALKEVPLGLFQLDALMFLRL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 QGNQLAALPPQEKWTCRQLKTLDLSRNQLGKNEDGLKTKRIAFFTTRGRQRSGTEAASVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QGNQLAALPPQEKWTCRQLKTLDLSRNQLGKNEDGLKTKRIAFFTTRGRQRSGTEAASVL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 EFPAFLSESLEVLCLNDNHLDTVPPSVCLLKSLSELYLGNNPGLRELPPELGQLGNLWQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EFPAFLSESLEVLCLNDNHLDTVPPSVCLLKSLSELYLGNNPGLRELPPELGQLGNLWQL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 DTEDLTISNVPAEIQKEGPKAMLSYLRAQLRKAEKCKLMKMIIVGPPRQGKSTLLEILQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DTEDLTISNVPAEIQKEGPKAMLSYLRAQLRKAEKCKLMKMIIVGPPRQGKSTLLEILQT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 GRAPQVVHGEATIRTTKWELQRPAGSRAKVESVEFNVWDIGGPASMATVNQCFFTDKALY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GRAPQVVHGEATIRTTKWELQRPAGSRAKVESVEFNVWDIGGPASMATVNQCFFTDKALY
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE4 VVVWNLALGEEAVANLQFWLLNIEAKAPNAVVLVVGTHLDLIEAKFRVERIATLRAYVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VVVWNLALGEEAVANLQFWLLNIEAKAPNAVVLVVGTHLDLIEAKFRVERIATLRAYVLA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE4 LCRSPSGSRATGFPDITFKHLHEISCKSLEGQEGLRQLIFHVTCSMKDVGSTIGCQRLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LCRSPSGSRATGFPDITFKHLHEISCKSLEGQEGLRQLIFHVTCSMKDVGSTIGCQRLAG
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE4 RLIPRSYLSLQEAVLAEQQRRSRDDDVQYLTDRQLEQLVEQTPDNDIKDYEDLQSAISFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RLIPRSYLSLQEAVLAEQQRRSRDDDVQYLTDRQLEQLVEQTPDNDIKDYEDLQSAISFL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE4 IETGTLLHFPDTSHGLRNLYFLDPIWLSECLQRIFNIKGSRSVAKNGVIRAEDLRMLLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IETGTLLHFPDTSHGLRNLYFLDPIWLSECLQRIFNIKGSRSVAKNGVIRAEDLRMLLVG
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE4 TGFTQQTEEQYFQFLAKFEIALPVANDSYLLPHLLPSKPGLDTHGMRHPTANTIQRVFKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TGFTQQTEEQYFQFLAKFEIALPVANDSYLLPHLLPSKPGLDTHGMRHPTANTIQRVFKM
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE4 SFVPVGFWQRFIARMLISLAEMDLQLFENKKNTKSRNRKVTIYSFTGNQRNRCSTFRVKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SFVPVGFWQRFIARMLISLAEMDLQLFENKKNTKSRNRKVTIYSFTGNQRNRCSTFRVKR
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE4 NQTIYWQEGLLVTFDGGYLSVESSDVNWKKKKSGGMKIVCQSEVRDFSAMAFITDHVNSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NQTIYWQEGLLVTFDGGYLSVESSDVNWKKKKSGGMKIVCQSEVRDFSAMAFITDHVNSL
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE4 IDQWFPALTATESDGTPLMEQYVPCPVCETAWAQHTDPSEKSEDVQYFDMEDCVLTAIER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IDQWFPALTATESDGTPLMEQYVPCPVCETAWAQHTDPSEKSEDVQYFDMEDCVLTAIER
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE4 DFISCPRHPDLPVPLQELVPELFMTDFPARLFLENSKLEHSEDEGSVLGQGGSGTVIYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DFISCPRHPDLPVPLQELVPELFMTDFPARLFLENSKLEHSEDEGSVLGQGGSGTVIYRA
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE4 RYQGQPVAVKRFHIKKFKNFANVPADTMLRHLRATDAMKNFSEFRQEASMLHALQHPCIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RYQGQPVAVKRFHIKKFKNFANVPADTMLRHLRATDAMKNFSEFRQEASMLHALQHPCIV
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE4 ALIGISIHPLCFALELAPLSSLNTVLSENARDSSFIPLGHMLTQKIAYQIASGLAYLHKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ALIGISIHPLCFALELAPLSSLNTVLSENARDSSFIPLGHMLTQKIAYQIASGLAYLHKK
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KE4 NIIFCDLKSDNILVWSLDVKEHINIKLSDYGISRQSFHEGALGVEGTPGYQAPEIRPRIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NIIFCDLKSDNILVWSLDVKEHINIKLSDYGISRQSFHEGALGVEGTPGYQAPEIRPRIV
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KE4 YDEKVDMFSYGMVLYELLSGQRPALGHHQLQIAKKLSKGIRPVLGQPEEVQFRRLQALMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YDEKVDMFSYGMVLYELLSGQRPALGHHQLQIAKKLSKGIRPVLGQPEEVQFRRLQALMM
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KE4 ECWDTKPEKRPLALSVVSQMKDPTFATFMYELCCGKQTAFFSSQGQEYTVVFWDGKEESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ECWDTKPEKRPLALSVVSQMKDPTFATFMYELCCGKQTAFFSSQGQEYTVVFWDGKEESR
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KE4 NYTVVNTEKGLMEVQRMCCPGMKVSCQLQVQRSLWTATEDQKIYIYTLKGMCPLNTPQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NYTVVNTEKGLMEVQRMCCPGMKVSCQLQVQRSLWTATEDQKIYIYTLKGMCPLNTPQQA
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KE4 LDTPAVVTCFLAVPVIKKNSYLVLAGLADGLVAVFPVVRGTPKDSCSYLCSHTANRSKFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LDTPAVVTCFLAVPVIKKNSYLVLAGLADGLVAVFPVVRGTPKDSCSYLCSHTANRSKFS
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KE4 IADEDARQNPYPVKAMEVVNSGSEVWYSNGPGLLVIDCASLEICRRLEPYMAPSMVTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IADEDARQNPYPVKAMEVVNSGSEVWYSNGPGLLVIDCASLEICRRLEPYMAPSMVTSVV
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KE4 CSSEGRGEEVVWCLDDKANSLVMYHSTTYQLCARYFCGVPSPLRDMFPVRPLDTEPPAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CSSEGRGEEVVWCLDDKANSLVMYHSTTYQLCARYFCGVPSPLRDMFPVRPLDTEPPAAS
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KE4 HTANPKVPEGDSIADVSIMYSEELGTQILIHQESLTDYCSMSSYSSSPPRQAARSPSSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HTANPKVPEGDSIADVSIMYSEELGTQILIHQESLTDYCSMSSYSSSPPRQAARSPSSLP
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KE4 SSPASSSSVPFSTDCEDSDMLHTPGAASDRSEHDLTPMDGETFSQHLQAVKILAVRDLIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SSPASSSSVPFSTDCEDSDMLHTPGAASDRSEHDLTPMDGETFSQHLQAVKILAVRDLIW
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960 1970 1980
pF1KE4 VPRRGGDVIVIGLEKDSGAQRGRVIAVLKARELTPHGVLVDAAVVAKDTVVCTFENENTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VPRRGGDVIVIGLEKDSGAQRGRVIAVLKARELTPHGVLVDAAVVAKDTVVCTFENENTE
1930 1940 1950 1960 1970 1980
1990 2000 2010
pF1KE4 WCLAVWRGWGAREFDIFYQSYEELGRLEACTRKRR
:::::::::::::::::::::::::::::::::::
CCDS42 WCLAVWRGWGAREFDIFYQSYEELGRLEACTRKRR
1990 2000 2010
2015 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Jul 16 15:53:53 2019 done: Tue Jul 16 15:53:53 2019
Total Scan time: 3.370 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]