Result of FASTA (ccds) for
pF1KE3935
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3935, 466 aa
1>>>pF1KE3935 466 - 466 aa - 466 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4740+/-0.000949; mu= -3.5202+/- 0.058
mean_var=302.5414+/-62.198, 0's: 0 Z-trim(115.3): 22 B-trim: 2 in 1/52
Lambda= 0.073736
statistics sampled from 15799 (15817) to 15799 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.486), width: 16
Scan time: 3.760
The best scores are: opt bits E(32554)
CCDS4319.1 G3BP1 gene_id:10146|Hs108|chr5 ( 466) 3191 352.6 5.1e-97
CCDS3571.1 G3BP2 gene_id:9908|Hs108|chr4 ( 482) 1600 183.3 4.7e-46
CCDS3572.1 G3BP2 gene_id:9908|Hs108|chr4 ( 449) 1025 122.2 1.1e-27
>>CCDS4319.1 G3BP1 gene_id:10146|Hs108|chr5 (466 aa)
initn: 3191 init1: 3191 opt: 3191 Z-score: 1855.2 bits: 352.6 E(32554): 5.1e-97
Smith-Waterman score: 3191; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466)
10 20 30 40 50 60
pF1KE3 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 QRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 QSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE
370 380 390 400 410 420
430 440 450 460
pF1KE3 GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ
::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ
430 440 450 460
>>CCDS3571.1 G3BP2 gene_id:9908|Hs108|chr4 (482 aa)
initn: 1595 init1: 860 opt: 1600 Z-score: 940.3 bits: 183.3 E(32554): 4.7e-46
Smith-Waterman score: 1981; 65.4% identity (80.3% similar) in 482 aa overlap (1-461:1-471)
10 20 30 40 50 60
pF1KE3 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
::::::::::::::::::::::::.::..::::::.::::::::.:..::: .:::::..
CCDS35 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
::.::.: ::..::::::::::::::.:::::::::::::..: :.:::::::::::::
CCDS35 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEP-EERQQTPEVVPDDSGT-FYDQAV
::::::::.:::.::::: : .::::.:::: :::: .:: : ..... .:.
CCDS35 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI
:.: .:: ::: ::::.:: : . : : ::. : :.. : .::..: ::.
CCDS35 VTNGIEEPLEESSHEPEPEPESETKTE------ELKPQ-VEEKNLEELEEKSTTPPPAEP
190 200 210 220 230
240 250 260 270 280 290
pF1KE3 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ
.. :: ..:::::::::::::::.: .:::::: :.:.:::: :.::: : : :
CCDS35 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHV-KAPVSQPRVEAKPEVQSQPPRV-
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE3 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD
:.:: :: : ..:: ::::: : ::.: . ::..:.:::::::.:::::..:..:::.
CCDS35 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE
300 310 320 330 340
360 370 380 390 400 410
pF1KE3 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT
::.:.:::::::::. :::::::::::::::::::..: .:::::::::::::::::
CCDS35 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT
350 360 370 380 390 400
420 430 440 450
pF1KE3 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RGPP-RGGMVQKPGFGVG
::::: :::: : :::::::: .:::: :::: ::::.:: : : :
CCDS35 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG
410 420 430 440 450 460
460
pF1KE3 RGLAPRQ
:
CCDS35 TGQMEGRFTGQRR
470 480
>>CCDS3572.1 G3BP2 gene_id:9908|Hs108|chr4 (449 aa)
initn: 1446 init1: 860 opt: 1025 Z-score: 610.2 bits: 122.2 E(32554): 1.1e-27
Smith-Waterman score: 1745; 60.4% identity (74.3% similar) in 482 aa overlap (1-461:1-438)
10 20 30 40 50 60
pF1KE3 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
::::::::::::::::::::::::.::..::::::.::::::::.:..::: .:::::..
CCDS35 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
::.::.: ::..::::::::::::::.:::::::::::::..: :.:::::::::::::
CCDS35 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEP-EERQQTPEVVPDDSGT-FYDQAV
::::::::.:::.::::: : .::::.:::: :::: .:: : ..... .:.
CCDS35 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI
:.: .:: ::: ::::.:: : . : : ::. : :.. : .::..: ::.
CCDS35 VTNGIEEPLEESSHEPEPEPESETKTE------ELKPQ-VEEKNLEELEEKSTTPPPAEP
190 200 210 220 230
240 250 260 270 280 290
pF1KE3 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ
.. :: :: .:: :.::: : : :
CCDS35 VSLPQE---------------PP-------------------KPRVEAKPEVQSQPPRV-
240 250
300 310 320 330 340 350
pF1KE3 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD
:.:: :: : ..:: ::::: : ::.: . ::..:.:::::::.:::::..:..:::.
CCDS35 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE
260 270 280 290 300 310
360 370 380 390 400 410
pF1KE3 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT
::.:.:::::::::. :::::::::::::::::::..: .:::::::::::::::::
CCDS35 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT
320 330 340 350 360 370
420 430 440 450
pF1KE3 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RGPP-RGGMVQKPGFGVG
::::: :::: : :::::::: .:::: :::: ::::.:: : : :
CCDS35 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG
380 390 400 410 420 430
460
pF1KE3 RGLAPRQ
:
CCDS35 TGQMEGRFTGQRR
440
466 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 18 17:34:33 2016 done: Fri Nov 18 17:34:34 2016
Total Scan time: 3.760 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]