FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3815, 485 aa
  1>>>pF1KE3815     485 - 485 aa - 485 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9080+/-0.00103; mu= -2.9774+/- 0.062
 mean_var=507.0629+/-103.933, 0's: 0 Z-trim(117.7): 56  B-trim: 175 in 1/52
 Lambda= 0.056957
 statistics sampled from 18637 (18693) to 18637 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.559), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(33420)
CCDS77990.1 DUX4 gene_id:100288687|Hs109|chr4      ( 424) 3014 261.8 1.1e-69


>>CCDS77990.1 DUX4 gene_id:100288687|Hs109|chr4           (424 aa)
 initn: 3014 init1: 3014 opt: 3014  Z-score: 1365.0  bits: 261.8 E(33420): 1.1e-69
Smith-Waterman score: 3014; 100.0% identity (100.0% similar) in 424 aa overlap (62-485:1-424)

              40        50        60        70        80        90 
pF1KE3 AVHSPAEVHGSPPASLCPRPSVKFRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWTPSQ
                                     ::::::::::::::::::::::::::::::
CCDS77                               MALPTPSDSTLPAEARGRGRRRRLVWTPSQ
                                             10        20        30

             100       110       120       130       140       150 
pF1KE3 SEALRACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SEALRACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRG
               40        50        60        70        80        90

             160       170       180       190       200       210 
pF1KE3 PPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRIQIWFQNRRARHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRIQIWFQNRRARHP
              100       110       120       130       140       150

             220       230       240       250       260       270 
pF1KE3 GQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTGLPAPHVPCAPGALPQGAFVSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTGLPAPHVPCAPGALPQGAFVSQ
              160       170       180       190       200       210

             280       290       300       310       320       330 
pF1KE3 AARAAPALQPSQAAPAEGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AARAAPALQPSQAAPAEGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDR
              220       230       240       250       260       270

             340       350       360       370       380       390 
pF1KE3 DPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAA
              280       290       300       310       320       330

             400       410       420       430       440       450 
pF1KE3 PPPQPAPPDASASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEFLQQAQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PPPQPAPPDASASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEFLQQAQPL
              340       350       360       370       380       390

             460       470       480     
pF1KE3 LETEAPGELEASEEAASLEAPLSEEEYRALLEEL
       ::::::::::::::::::::::::::::::::::
CCDS77 LETEAPGELEASEEAASLEAPLSEEEYRALLEEL
              400       410       420    




485 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jul 24 16:39:25 2018 done: Tue Jul 24 16:39:25 2018
 Total Scan time:  1.800 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]