Result of FASTA (omim) for
pF1KE3268
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3268, 666 aa
1>>>pF1KE3268 666 - 666 aa - 666 aa
Library: /omim/omim.rfq.tfa
64092750 residues in 91774 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.6175+/-0.000465; mu= -9.7957+/- 0.029
mean_var=374.7257+/-75.553, 0's: 0 Z-trim(120.7): 119 B-trim: 0 in 0/52
Lambda= 0.066255
statistics sampled from 37449 (37575) to 37449 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.409), width: 16
Scan time: 5.840
The best scores are: opt bits E(91774)
NP_620147 (OMIM: 610507) RNA polymerase-associated ( 666) 4454 440.3 1.1e-122
NP_001310832 (OMIM: 610507) RNA polymerase-associa ( 688) 4243 420.2 1.4e-116
NP_001310833 (OMIM: 610507) RNA polymerase-associa ( 654) 4232 419.1 2.7e-116
XP_016877400 (OMIM: 610507) RNA polymerase-associa ( 642) 4226 418.5 4e-116
NP_001273359 (OMIM: 610507) RNA polymerase-associa ( 606) 2605 263.6 1.7e-69
NP_055023 (OMIM: 125420,125485,125490,125500,60559 (1301) 430 55.9 1.2e-06
XP_011529368 (OMIM: 300369) acidic repeat-containi ( 673) 294 42.7 0.0057
XP_011529369 (OMIM: 300369) acidic repeat-containi ( 673) 294 42.7 0.0057
XP_016885454 (OMIM: 300369) acidic repeat-containi ( 691) 294 42.7 0.0059
XP_006724779 (OMIM: 300369) acidic repeat-containi ( 691) 294 42.7 0.0059
XP_011529366 (OMIM: 300369) acidic repeat-containi ( 691) 294 42.7 0.0059
NP_443189 (OMIM: 300369) acidic repeat-containing ( 691) 294 42.7 0.0059
XP_011529365 (OMIM: 300369) acidic repeat-containi ( 700) 294 42.7 0.0059
>>NP_620147 (OMIM: 610507) RNA polymerase-associated pro (666 aa)
initn: 4454 init1: 4454 opt: 4454 Z-score: 2323.9 bits: 440.3 E(91774): 1.1e-122
Smith-Waterman score: 4454; 100.0% identity (100.0% similar) in 666 aa overlap (1-666:1-666)
10 20 30 40 50 60
pF1KE3 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
610 620 630 640 650 660
pF1KE3 EEEDDD
::::::
NP_620 EEEDDD
>>NP_001310832 (OMIM: 610507) RNA polymerase-associated (688 aa)
initn: 4232 init1: 4232 opt: 4243 Z-score: 2214.7 bits: 420.2 E(91774): 1.4e-116
Smith-Waterman score: 4243; 99.4% identity (99.5% similar) in 641 aa overlap (1-641:1-638)
10 20 30 40 50 60
pF1KE3 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
::::::::::::::::::::::::::::::::: ::::.
NP_001 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEE---SGKRERPKLKETWRQWKGEVSRPT
610 620 630 640 650
pF1KE3 EEEDDD
NP_001 LSFLRQNRKVNLPEREKQKMMIKQIKSIRSM
660 670 680
>>NP_001310833 (OMIM: 610507) RNA polymerase-associated (654 aa)
initn: 4226 init1: 4226 opt: 4232 Z-score: 2209.3 bits: 419.1 E(91774): 2.7e-116
Smith-Waterman score: 4232; 98.8% identity (99.4% similar) in 641 aa overlap (1-641:1-641)
10 20 30 40 50 60
pF1KE3 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
:::::::::::::::::::::::::::::::: . : ...
NP_001 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEVNLPEREKQKMMIKQIKSIRSM
610 620 630 640 650
pF1KE3 EEEDDD
>>XP_016877400 (OMIM: 610507) RNA polymerase-associated (642 aa)
initn: 4226 init1: 4226 opt: 4226 Z-score: 2206.3 bits: 418.5 E(91774): 4e-116
Smith-Waterman score: 4226; 100.0% identity (100.0% similar) in 632 aa overlap (1-632:1-632)
10 20 30 40 50 60
pF1KE3 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
::::::::::::::::::::::::::::::::
XP_016 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEICKNCICLGR
610 620 630 640
pF1KE3 EEEDDD
>>NP_001273359 (OMIM: 610507) RNA polymerase-associated (606 aa)
initn: 2605 init1: 2605 opt: 2605 Z-score: 1369.3 bits: 263.6 E(91774): 1.7e-69
Smith-Waterman score: 3913; 91.0% identity (91.0% similar) in 666 aa overlap (1-666:1-606)
10 20 30 40 50 60
pF1KE3 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
::::::::::::::::::::::::::
NP_001 EIPKVNTDLGNDLYFVKLPNFLSVEP----------------------------------
370 380
430 440 450 460 470 480
pF1KE3 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
::::::::::::::::::::::::::::::::::
NP_001 --------------------------SMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
390 400 410 420
490 500 510 520 530 540
pF1KE3 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
430 440 450 460 470 480
550 560 570 580 590 600
pF1KE3 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
490 500 510 520 530 540
610 620 630 640 650 660
pF1KE3 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
550 560 570 580 590 600
pF1KE3 EEEDDD
::::::
NP_001 EEEDDD
>>NP_055023 (OMIM: 125420,125485,125490,125500,605594) d (1301 aa)
initn: 958 init1: 346 opt: 430 Z-score: 241.1 bits: 55.9 E(91774): 1.2e-06
Smith-Waterman score: 430; 28.6% identity (66.9% similar) in 329 aa overlap (10-329:690-1008)
10 20 30
pF1KE3 MADMEDLFGSDA-DSEAERKDSDSGSDSDSDQENAASGS
::. :: ..:::...::::. .....:
NP_055 SNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSS
660 670 680 690 700 710
40 50 60 70 80 90
pF1KE3 NASGSESDQDERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHED
:...:.::... .::.. ::. .:: : . : .:.... : :.: :..:. :: :
NP_055 NSNSSDSDSSNSSDSSDSSNS----SDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSD
720 730 740 750 760 770
100 110 120 130 140 150
pF1KE3 N-DPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDE
. : :. .. . : .:. : .. ::... . ...:... ::. . :.:..::.
NP_055 SSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSN--SSDSSNSSDSS
780 790 800 810 820 830
160 170 180 190 200 210
pF1KE3 KIQNSDDE----ERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSD
.::.: . ..::: :. . ::.... ...:. . . ::. .. :.: . .::
NP_055 DSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSD
840 850 860 870 880 890
220 230 240 250 260 270
pF1KE3 D-ERPVASDND--DEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDEEEQDHK
. . .::.: : ...::. .. . :: . .::.:. .... . :.: .....
NP_055 SSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNS
900 910 920 930 940 950
280 290 300 310 320 330
pF1KE3 SESARGSDSEDEVLRMKRKNAIASDSEADSDTEVPKDNSGTMDLFGGADDISSGSDGEDK
:.:. .::: . ... .::: .::. .:.: . : ..: :..::. :
NP_055 SDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSD----SSDSSNSSDSSDS
960 970 980 990 1000
340 350 360 370 380 390
pF1KE3 PPTPGQPVDENGLPQDQQEEEPIPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFD
NP_055 SDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDS
1010 1020 1030 1040 1050 1060
>>XP_011529368 (OMIM: 300369) acidic repeat-containing p (673 aa)
initn: 435 init1: 182 opt: 294 Z-score: 174.8 bits: 42.7 E(91774): 0.0057
Smith-Waterman score: 343; 30.3% identity (60.4% similar) in 323 aa overlap (3-303:117-428)
10 20 30
pF1KE3 MADMEDLFGSDADSEAERKDSD-SGSDSDSDQ
:.: .. :::: .:: : . .:...
XP_011 ESPECCHVKPAIQEPPIVISDDDNDDDNGNDLEVPDDNSDDSEAPDDNSDDSEAPDDNSD
90 100 110 120 130 140
40 50 60 70 80 90
pF1KE3 ENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSEAS
.. : .:.. ::. .:. :: :... .::: :.... ..::..:. :: .. :
XP_011 DSEAPDDNSDDSEAPDDNSDDSDVPDDN---SDDSSDDNSD--DSSDDNSDDSDVPDDKS
150 160 170 180 190 200
100 110 120 130 140
pF1KE3 ERSDHEDN--DPSDV--DQHSGSEAPNDDEDEGHRSDGGSHHSEA--EGSEKAHS-DDEK
. :: :. : ::: :. . ::::.:. :... : .: ::: ..:. ... :: .
XP_011 DDSDVPDDSSDDSDVPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSS
210 220 230 240 250 260
150 160 170 180 190
pF1KE3 WGREDKSDQSDDEKIQN--SDDEE----RAQGSDEDKLQNSDDDEKMQNTDDEERPQLSD
: ..:.::: . .. ::: : ... :: . ...:.: .:.:: : : ..
XP_011 DDSEASDDSSDDSEASDDSSDDSEAPDDKSDDSDVPEDKSDDSDVPDDNSDDLEVPVPAE
270 280 290 300 310 320
200 210 220 230 240 250
pF1KE3 DERQQLSEEEKANSDDERPV-ASDNDDEKQNSDDEEQPQLSDEEKMQNSDDE-RPQASDE
: : .: . ::.:. : :. .....::: . .:... . :: : :..:
XP_011 D----LCNEGQIASDEEELVEAAAAVSQHDSSDDAGEQDLGENLSKPPSDPEANPEVS--
330 340 350 360 370
260 270 280 290 300 310
pF1KE3 EHRHSDDEE-----EQDHKSESARGSDSEDEVLRM-KRKNAIASDSEADSDTEVPKDNSG
:.. .:: ::. : .: . : :. : :: . . .. :.
XP_011 ERKLPTEEEPAPVVEQSGKRKSKTKTIVEPPRKRQTKTKNIVEPPRKRQTKTKNIVEPLR
380 390 400 410 420 430
320 330 340 350 360 370
pF1KE3 TMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEVEIPKVNTDLG
XP_011 KRKAKTKNVSVTPGHKKRGPSKKKPGAAKVEKRKTRTPKCKVPGCFLQDLEKSKKYSGKN
440 450 460 470 480 490
>>XP_011529369 (OMIM: 300369) acidic repeat-containing p (673 aa)
initn: 435 init1: 182 opt: 294 Z-score: 174.8 bits: 42.7 E(91774): 0.0057
Smith-Waterman score: 343; 30.3% identity (60.4% similar) in 323 aa overlap (3-303:117-428)
10 20 30
pF1KE3 MADMEDLFGSDADSEAERKDSD-SGSDSDSDQ
:.: .. :::: .:: : . .:...
XP_011 ESPECCHVKPAIQEPPIVISDDDNDDDNGNDLEVPDDNSDDSEAPDDNSDDSEAPDDNSD
90 100 110 120 130 140
40 50 60 70 80 90
pF1KE3 ENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSEAS
.. : .:.. ::. .:. :: :... .::: :.... ..::..:. :: .. :
XP_011 DSEAPDDNSDDSEAPDDNSDDSDVPDDN---SDDSSDDNSD--DSSDDNSDDSDVPDDKS
150 160 170 180 190 200
100 110 120 130 140
pF1KE3 ERSDHEDN--DPSDV--DQHSGSEAPNDDEDEGHRSDGGSHHSEA--EGSEKAHS-DDEK
. :: :. : ::: :. . ::::.:. :... : .: ::: ..:. ... :: .
XP_011 DDSDVPDDSSDDSDVPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSS
210 220 230 240 250 260
150 160 170 180 190
pF1KE3 WGREDKSDQSDDEKIQN--SDDEE----RAQGSDEDKLQNSDDDEKMQNTDDEERPQLSD
: ..:.::: . .. ::: : ... :: . ...:.: .:.:: : : ..
XP_011 DDSEASDDSSDDSEASDDSSDDSEAPDDKSDDSDVPEDKSDDSDVPDDNSDDLEVPVPAE
270 280 290 300 310 320
200 210 220 230 240 250
pF1KE3 DERQQLSEEEKANSDDERPV-ASDNDDEKQNSDDEEQPQLSDEEKMQNSDDE-RPQASDE
: : .: . ::.:. : :. .....::: . .:... . :: : :..:
XP_011 D----LCNEGQIASDEEELVEAAAAVSQHDSSDDAGEQDLGENLSKPPSDPEANPEVS--
330 340 350 360 370
260 270 280 290 300 310
pF1KE3 EHRHSDDEE-----EQDHKSESARGSDSEDEVLRM-KRKNAIASDSEADSDTEVPKDNSG
:.. .:: ::. : .: . : :. : :: . . .. :.
XP_011 ERKLPTEEEPAPVVEQSGKRKSKTKTIVEPPRKRQTKTKNIVEPPRKRQTKTKNIVEPLR
380 390 400 410 420 430
320 330 340 350 360 370
pF1KE3 TMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEVEIPKVNTDLG
XP_011 KRKAKTKNVSVTPGHKKRGPSKKKPGAAKVEKRKTRTPKCKVPGCFLQDLEKSKKYSGKN
440 450 460 470 480 490
>>XP_016885454 (OMIM: 300369) acidic repeat-containing p (691 aa)
initn: 435 init1: 182 opt: 294 Z-score: 174.7 bits: 42.7 E(91774): 0.0059
Smith-Waterman score: 343; 30.3% identity (60.4% similar) in 323 aa overlap (3-303:135-446)
10 20 30
pF1KE3 MADMEDLFGSDADSEAERKDSD-SGSDSDSDQ
:.: .. :::: .:: : . .:...
XP_016 ESPECCHVKPAIQEPPIVISDDDNDDDNGNDLEVPDDNSDDSEAPDDNSDDSEAPDDNSD
110 120 130 140 150 160
40 50 60 70 80 90
pF1KE3 ENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSEAS
.. : .:.. ::. .:. :: :... .::: :.... ..::..:. :: .. :
XP_016 DSEAPDDNSDDSEAPDDNSDDSDVPDDN---SDDSSDDNSD--DSSDDNSDDSDVPDDKS
170 180 190 200 210
100 110 120 130 140
pF1KE3 ERSDHEDN--DPSDV--DQHSGSEAPNDDEDEGHRSDGGSHHSEA--EGSEKAHS-DDEK
. :: :. : ::: :. . ::::.:. :... : .: ::: ..:. ... :: .
XP_016 DDSDVPDDSSDDSDVPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSS
220 230 240 250 260 270
150 160 170 180 190
pF1KE3 WGREDKSDQSDDEKIQN--SDDEE----RAQGSDEDKLQNSDDDEKMQNTDDEERPQLSD
: ..:.::: . .. ::: : ... :: . ...:.: .:.:: : : ..
XP_016 DDSEASDDSSDDSEASDDSSDDSEAPDDKSDDSDVPEDKSDDSDVPDDNSDDLEVPVPAE
280 290 300 310 320 330
200 210 220 230 240 250
pF1KE3 DERQQLSEEEKANSDDERPV-ASDNDDEKQNSDDEEQPQLSDEEKMQNSDDE-RPQASDE
: : .: . ::.:. : :. .....::: . .:... . :: : :..:
XP_016 D----LCNEGQIASDEEELVEAAAAVSQHDSSDDAGEQDLGENLSKPPSDPEANPEVS--
340 350 360 370 380 390
260 270 280 290 300 310
pF1KE3 EHRHSDDEE-----EQDHKSESARGSDSEDEVLRM-KRKNAIASDSEADSDTEVPKDNSG
:.. .:: ::. : .: . : :. : :: . . .. :.
XP_016 ERKLPTEEEPAPVVEQSGKRKSKTKTIVEPPRKRQTKTKNIVEPPRKRQTKTKNIVEPLR
400 410 420 430 440 450
320 330 340 350 360 370
pF1KE3 TMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEVEIPKVNTDLG
XP_016 KRKAKTKNVSVTPGHKKRGPSKKKPGAAKVEKRKTRTPKCKVPGCFLQDLEKSKKYSGKN
460 470 480 490 500 510
>>XP_006724779 (OMIM: 300369) acidic repeat-containing p (691 aa)
initn: 435 init1: 182 opt: 294 Z-score: 174.7 bits: 42.7 E(91774): 0.0059
Smith-Waterman score: 343; 30.3% identity (60.4% similar) in 323 aa overlap (3-303:135-446)
10 20 30
pF1KE3 MADMEDLFGSDADSEAERKDSD-SGSDSDSDQ
:.: .. :::: .:: : . .:...
XP_006 ESPECCHVKPAIQEPPIVISDDDNDDDNGNDLEVPDDNSDDSEAPDDNSDDSEAPDDNSD
110 120 130 140 150 160
40 50 60 70 80 90
pF1KE3 ENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSEAS
.. : .:.. ::. .:. :: :... .::: :.... ..::..:. :: .. :
XP_006 DSEAPDDNSDDSEAPDDNSDDSDVPDDN---SDDSSDDNSD--DSSDDNSDDSDVPDDKS
170 180 190 200 210
100 110 120 130 140
pF1KE3 ERSDHEDN--DPSDV--DQHSGSEAPNDDEDEGHRSDGGSHHSEA--EGSEKAHS-DDEK
. :: :. : ::: :. . ::::.:. :... : .: ::: ..:. ... :: .
XP_006 DDSDVPDDSSDDSDVPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSS
220 230 240 250 260 270
150 160 170 180 190
pF1KE3 WGREDKSDQSDDEKIQN--SDDEE----RAQGSDEDKLQNSDDDEKMQNTDDEERPQLSD
: ..:.::: . .. ::: : ... :: . ...:.: .:.:: : : ..
XP_006 DDSEASDDSSDDSEASDDSSDDSEAPDDKSDDSDVPEDKSDDSDVPDDNSDDLEVPVPAE
280 290 300 310 320 330
200 210 220 230 240 250
pF1KE3 DERQQLSEEEKANSDDERPV-ASDNDDEKQNSDDEEQPQLSDEEKMQNSDDE-RPQASDE
: : .: . ::.:. : :. .....::: . .:... . :: : :..:
XP_006 D----LCNEGQIASDEEELVEAAAAVSQHDSSDDAGEQDLGENLSKPPSDPEANPEVS--
340 350 360 370 380 390
260 270 280 290 300 310
pF1KE3 EHRHSDDEE-----EQDHKSESARGSDSEDEVLRM-KRKNAIASDSEADSDTEVPKDNSG
:.. .:: ::. : .: . : :. : :: . . .. :.
XP_006 ERKLPTEEEPAPVVEQSGKRKSKTKTIVEPPRKRQTKTKNIVEPPRKRQTKTKNIVEPLR
400 410 420 430 440 450
320 330 340 350 360 370
pF1KE3 TMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEVEIPKVNTDLG
XP_006 KRKAKTKNVSVTPGHKKRGPSKKKPGAAKVEKRKTRTPKCKVPGCFLQDLEKSKKYSGKN
460 470 480 490 500 510
666 residues in 1 query sequences
64092750 residues in 91774 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Jul 16 15:58:10 2019 done: Tue Jul 16 15:58:11 2019
Total Scan time: 5.840 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]