FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3268, 666 aa
  1>>>pF1KE3268     666 - 666 aa - 666 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6949+/-0.00124; mu= -3.8921+/- 0.075
 mean_var=328.1196+/-67.454, 0's: 0 Z-trim(112.0): 52  B-trim: 196 in 1/50
 Lambda= 0.070804
 statistics sampled from 12950 (12990) to 12950 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.389), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(33420)
CCDS10146.1 LEO1 gene_id:123169|Hs109|chr15        ( 666) 4454 469.2 8.3e-132
CCDS66767.1 LEO1 gene_id:123169|Hs109|chr15        ( 606) 2605 280.3 5.6e-75


>>CCDS10146.1 LEO1 gene_id:123169|Hs109|chr15             (666 aa)
 initn: 4454 init1: 4454 opt: 4454  Z-score: 2480.0  bits: 469.2 E(33420): 8.3e-132
Smith-Waterman score: 4454; 100.0% identity (100.0% similar) in 666 aa overlap (1-666:1-666)

               10        20        30        40        50        60
pF1KE3 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
              610       620       630       640       650       660

             
pF1KE3 EEEDDD
       ::::::
CCDS10 EEEDDD
             

>>CCDS66767.1 LEO1 gene_id:123169|Hs109|chr15             (606 aa)
 initn: 2605 init1: 2605 opt: 2605  Z-score: 1459.8  bits: 280.3 E(33420): 5.6e-75
Smith-Waterman score: 3913; 91.0% identity (91.0% similar) in 666 aa overlap (1-666:1-606)

               10        20        30        40        50        60
pF1KE3 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 DDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 DTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 EIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENTI
       ::::::::::::::::::::::::::                                  
CCDS66 EIPKVNTDLGNDLYFVKLPNFLSVEP----------------------------------
              370       380                                        

              430       440       450       460       470       480
pF1KE3 RWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
                                 ::::::::::::::::::::::::::::::::::
CCDS66 --------------------------SMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQ
                                  390       400       410       420

              490       500       510       520       530       540
pF1KE3 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEE
              430       440       450       460       470       480

              550       560       570       580       590       600
pF1KE3 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIRE
              490       500       510       520       530       540

              610       620       630       640       650       660
pF1KE3 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ERARIYSSDSDEGSEEDKAQRLLKAKKLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDE
              550       560       570       580       590       600

             
pF1KE3 EEEDDD
       ::::::
CCDS66 EEEDDD
             




666 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jul 16 15:58:09 2019 done: Tue Jul 16 15:58:10 2019
 Total Scan time:  1.820 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]