Result of FASTA (ccds) for
pF1KE3218
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3218, 495 aa
1>>>pF1KE3218 495 - 495 aa - 495 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4612+/-0.000864; mu= 12.9022+/- 0.052
mean_var=100.5383+/-20.929, 0's: 0 Z-trim(108.7): 54 B-trim: 628 in 1/50
Lambda= 0.127911
statistics sampled from 10488 (10530) to 10488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.315), width: 16
Scan time: 1.610
The best scores are: opt bits E(33420)
CCDS9809.1 DCAF4 gene_id:26094|Hs109|chr14 ( 495) 3354 629.6 2.5e-180
CCDS55926.1 DCAF4 gene_id:26094|Hs109|chr14 ( 489) 3278 615.5 4.1e-176
CCDS9810.1 DCAF4 gene_id:26094|Hs109|chr14 ( 395) 2642 498.1 7.4e-141
CCDS41968.2 DCAF4 gene_id:26094|Hs109|chr14 ( 435) 2135 404.6 1.2e-112
CCDS33978.1 DCAF4L1 gene_id:285429|Hs109|chr4 ( 396) 2057 390.2 2.3e-108
CCDS6245.1 DCAF4L2 gene_id:138009|Hs109|chr8 ( 395) 2024 384.1 1.6e-106
>>CCDS9809.1 DCAF4 gene_id:26094|Hs109|chr14 (495 aa)
initn: 3354 init1: 3354 opt: 3354 Z-score: 3351.2 bits: 629.6 E(33420): 2.5e-180
Smith-Waterman score: 3354; 99.4% identity (99.6% similar) in 495 aa overlap (1-495:1-495)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQGK
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS98 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQGK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 HVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS98 HVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
430 440 450 460 470 480
490
pF1KE3 LLMAVGQDLYCYSYS
:::::::::::::::
CCDS98 LLMAVGQDLYCYSYS
490
>>CCDS55926.1 DCAF4 gene_id:26094|Hs109|chr14 (489 aa)
initn: 2890 init1: 1815 opt: 3278 Z-score: 3275.4 bits: 615.5 E(33420): 4.1e-176
Smith-Waterman score: 3278; 98.0% identity (98.0% similar) in 496 aa overlap (1-495:1-489)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS55 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
:::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS55 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLA-------PLLFNGCRSGEIFAIDLRCGNQG
310 320 330 340 350
360 370 380 390 400 410
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS55 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
420 430 440 450 460 470
480 490
pF1KE3 GLLMAVGQDLYCYSYS
::::::::::::::::
CCDS55 GLLMAVGQDLYCYSYS
480
>>CCDS9810.1 DCAF4 gene_id:26094|Hs109|chr14 (395 aa)
initn: 2642 init1: 2642 opt: 2642 Z-score: 2642.5 bits: 498.1 E(33420): 7.4e-141
Smith-Waterman score: 2642; 99.2% identity (99.5% similar) in 395 aa overlap (101-495:1-395)
80 90 100 110 120 130
pF1KE3 FDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIARMGFNASSMLR
::::::::::::::::::::::::::::::
CCDS98 MESKRLRLLQEEDRRKKIARMGFNASSMLR
10 20 30
140 150 160 170 180 190
pF1KE3 KSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILADTNSDRLFTVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 KSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILADTNSDRLFTVN
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE3 DVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDSHILLCLMGLA
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 DVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDSHILLCLMGLA
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE3 ETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCFSTGLSRRVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCFSTGLSRRVLL
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE3 TNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQGKGWKATRLFHD
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS98 TNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQGKGWKATRLFHD
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE3 SAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPLHVHEEEGILV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 SAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPLHVHEEEGILV
280 290 300 310 320 330
440 450 460 470 480 490
pF1KE3 AVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPGLLMAVGQDLY
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 AVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPGLLMAVGQDLY
340 350 360 370 380 390
pF1KE3 CYSYS
:::::
CCDS98 CYSYS
>>CCDS41968.2 DCAF4 gene_id:26094|Hs109|chr14 (435 aa)
initn: 2929 init1: 1539 opt: 2135 Z-score: 2136.3 bits: 404.6 E(33420): 1.2e-112
Smith-Waterman score: 2813; 86.9% identity (87.1% similar) in 496 aa overlap (1-495:1-435)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKK---
70 80 90 100 110
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::
CCDS41 ----------------------------------------------------------AD
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
120 130 140 150 160 170
250 260 270 280 290
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS41 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
180 190 200 210 220 230
300 310 320 330 340 350
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS41 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
240 250 260 270 280 290
360 370 380 390 400 410
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
300 310 320 330 340 350
420 430 440 450 460 470
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS41 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
360 370 380 390 400 410
480 490
pF1KE3 GLLMAVGQDLYCYSYS
::::::::::::::::
CCDS41 GLLMAVGQDLYCYSYS
420 430
>>CCDS33978.1 DCAF4L1 gene_id:285429|Hs109|chr4 (396 aa)
initn: 2060 init1: 1974 opt: 2057 Z-score: 2059.1 bits: 390.2 E(33420): 2.3e-108
Smith-Waterman score: 2057; 76.5% identity (92.4% similar) in 396 aa overlap (101-495:1-396)
80 90 100 110 120 130
pF1KE3 FDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIARMGFNASSMLR
::..:::::.:: . ::.::::::::::::
CCDS33 MEAERLRLLEEEAKLKKVARMGFNASSMLR
10 20 30
140 150 160 170 180 190
pF1KE3 KSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILADTNSDRLFTVN
::::::::::.: .::.:::.::::::::::::.:::.:::::::.:::.::::.::.::
CCDS33 KSQLGFLNVTSYSRLANELRVSCMERKKVQIRSLDPSSLASDRFNFILASTNSDQLFVVN
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE3 DVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDSHILLCLMGLA
.: : :::::::.:..:: :...:.. .::: ::::.:.::::::.::::.:::. :..
CCDS33 QVEVEGSKYGIISLRTLKIPSFHVYVLRNLYVPNRKVKSLCWASLNQLDSHVLLCFEGIT
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE3 ETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCFSTGLSRRVLL
..:.::.::::: :.. : ...:::::::.:: ::::::::: .: .:::.:::..:::
CCDS33 DAPSCAVLLPASRFLSVHTRVNQPGMLCSFQIPEAWSCAWSLNTRAYHCFSAGLSQQVLL
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE3 TNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQGKGWKATRLFHD
:.:.:::.::: :.::::::::: :::::::::::::::::::: :.::::.:::::::
CCDS33 TSVATGHQQSFDTSSDVLAQQFASTAPLLFNGCRSGEIFAIDLRCRNRGKGWRATRLFHD
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE3 SAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPLHVHEEEGILV
::::::.:::.:: ::::::.:::::::::.::::::::::::: :::::::::::::.:
CCDS33 SAVTSVQILQEEQCLMASDMTGKIKLWDLRATKCVRQYEGHVNESAYLPLHVHEEEGIVV
280 290 300 310 320 330
440 450 460 470 480
pF1KE3 AVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGA-PGLLMAVGQDL
:::::::: :::::::.::::::::: ::. :::::::.::::: ::: ::::::: :::
CCDS33 AVGQDCYTRIWSLHDAHLLRTIPSPYSASEDDIPSVAFASRLGGIRGAAPGLLMAVRQDL
340 350 360 370 380 390
490
pF1KE3 YCYSYS
::. .:
CCDS33 YCFPFS
>>CCDS6245.1 DCAF4L2 gene_id:138009|Hs109|chr8 (395 aa)
initn: 2024 init1: 2024 opt: 2024 Z-score: 2026.2 bits: 384.1 E(33420): 1.6e-106
Smith-Waterman score: 2024; 74.4% identity (91.9% similar) in 394 aa overlap (101-494:1-394)
80 90 100 110 120 130
pF1KE3 FDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIARMGFNASSMLR
::::: :::.: :..:: .:.:.:: ::::
CCDS62 MESKRPRLLEEADKQKKTVRVGLNAPSMLR
10 20 30
140 150 160 170 180 190
pF1KE3 KSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILADTNSDRLFTVN
:.::::: .:::..:.:::.:::.::::::.: :::.::::::: :::.::.:.:::::
CCDS62 KNQLGFLRFANYCRIARELRVSCMQRKKVQIHSWDPSSLASDRFNRILANTNTDQLFTVN
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE3 DVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDSHILLCLMGLA
.: .::::::::....: :: :.:. :..:: ::::::.:::::::::::.:::..:::
CCDS62 QVEAGGSKYGIITMRGLTTPELRVYPHKTLYVPNRKVNSMCWASLNHLDSHLLLCFVGLA
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE3 ETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCFSTGLSRRVLL
.::.::.:::::::..: ::. ::::::::.:: ::::::::.:.: . ::::::..:::
CCDS62 DTPSCAVLLPASLFIGSFPGMRRPGMLCSFQIPDAWSCAWSLSIHAYHSFSTGLSQQVLL
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE3 TNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQGKGWKATRLFHD
:::::::.:::::.:::::::::.:.:::::::::::::.:::::::::.:::: : ::
CCDS62 TNVVTGHQQSFGTSSDVLAQQFAIMTPLLFNGCRSGEIFGIDLRCGNQGSGWKAICLSHD
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE3 SAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPLHVHEEEGILV
:::::..:::: :.:..:::.: :::::::.:::: :::::::. ::::.::.::::...
CCDS62 SAVTSLQILQDGQFLVSSDMTGTIKLWDLRATKCVTQYEGHVNNSAYLPVHVNEEEGVVA
280 290 300 310 320 330
440 450 460 470 480 490
pF1KE3 AVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPGLLMAVGQDLY
:::::::: ::::. ..:: :::::::::. ::::::::::::: :::::::::: .:::
CCDS62 AVGQDCYTRIWSLRHGHLLTTIPSPYPASENDIPSVAFSSRLGGFRGAPGLLMAVREDLY
340 350 360 370 380 390
pF1KE3 CYSYS
:.::
CCDS62 CFSYG
495 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Apr 23 11:11:42 2019 done: Tue Apr 23 11:11:42 2019
Total Scan time: 1.610 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]