FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3123, 310 aa
  1>>>pF1KE3123     310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6888+/-0.000773; mu= 14.0197+/- 0.047
 mean_var=68.4295+/-13.801, 0's: 0 Z-trim(108.2): 27  B-trim: 400 in 2/50
 Lambda= 0.155043
 statistics sampled from 10206 (10222) to 10206 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.306), width:  16
 Scan time:  1.180

The best scores are:                                      opt bits E(33420)
CCDS46437.1 PSMD14 gene_id:10213|Hs109|chr2        ( 310) 2053 467.9 4.6e-132
CCDS6198.1 COPS5 gene_id:10987|Hs109|chr8          ( 334)  474 114.7   1e-25


>>CCDS46437.1 PSMD14 gene_id:10213|Hs109|chr2             (310 aa)
 initn: 2053 init1: 2053 opt: 2053  Z-score: 2484.6  bits: 467.9 E(33420): 4.6e-132
Smith-Waterman score: 2053; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KE3 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 WLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 WLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 NESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCL
              250       260       270       280       290       300

              310
pF1KE3 AAMLDTVVFK
       ::::::::::
CCDS46 AAMLDTVVFK
              310

>>CCDS6198.1 COPS5 gene_id:10987|Hs109|chr8               (334 aa)
 initn: 414 init1: 236 opt: 474  Z-score: 575.3  bits: 114.7 E(33420): 1e-25
Smith-Waterman score: 474; 35.7% identity (65.9% similar) in 252 aa overlap (33-271:57-301)

             10        20        30        40        50        60  
pF1KE3 RLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV
                                     ::.::::::. :.:.:  .::::::::. :
CCDS61 EIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGK-V
         30        40        50        60        70        80      

             70        80        90         100       110       120
pF1KE3 DDYTVRVIDVFAMPQSGTGVSVEAVDPVFQ--AKMLDMLKQTGRPEMVVGWYHSHPGFGC
       :  :. ..: ::.:  :: . :.:   ...  : ...  ::.:: : ..::::::::.::
CCDS61 DGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGC
          90       100       110       120       130       140     

              130       140       150        160       170         
pF1KE3 WLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFRLINANMMVLGHEPRQTTS
       ::::.:..::.  . ..:  ::::.:: .... ::: . :::    ..    . : .  :
CCDS61 WLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGY----KPPDEGPS
         150       160       170       180       190           200 

     180       190        200       210       220             230  
pF1KE3 NLGHLNKPSIQAL-IHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGL------TLQ
       .   .   .:. . .:   ..::.. ..: :. :..:.:  : .: :.. :      :  
CCDS61 EYQTIPLNKIEDFGVH--CKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNA
             210         220       230       240       250         

              240       250        260       270       280         
pF1KE3 DYS--EHCKHNESVVKEMLELAK-NYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVD
       ::.  .    .:.. .   .:.. ..  ..: .:. . ..::                  
CCDS61 DYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLM
     260       270       280       290       300       310         

     290       300       310
pF1KE3 VLMTSNIVQCLAAMLDTVVFK
                            
CCDS61 SQVIKDKLFNQINIS      
     320       330          




310 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:58:37 2019 done: Thu Oct 24 21:58:38 2019
 Total Scan time:  1.180 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]