FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2805, 90 aa
  1>>>pF1KE2805     90 - 90 aa - 90 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5410+/-0.000584; mu= 11.9748+/- 0.035
 mean_var=49.3131+/-10.045, 0's: 0 Z-trim(110.6): 7  B-trim: 0 in 0/50
 Lambda= 0.182639
 statistics sampled from 11884 (11887) to 11884 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.356), width:  16
 Scan time:  1.060

The best scores are:                                      opt bits E(33420)
CCDS13129.1 BANF2 gene_id:140836|Hs109|chr20       (  90)  639 175.1 5.1e-45
CCDS54449.1 BANF2 gene_id:140836|Hs109|chr20       (  97)  639 175.2 5.5e-45
CCDS8125.1 BANF1 gene_id:8815|Hs109|chr11          (  89)  240 70.0 2.3e-13


>>CCDS13129.1 BANF2 gene_id:140836|Hs109|chr20            (90 aa)
 initn: 639 init1: 639 opt: 639  Z-score: 921.9  bits: 175.1 E(33420): 5.1e-45
Smith-Waterman score: 639; 98.9% identity (100.0% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KE2 MDDMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF
               10        20        30        40        50        60

               70        80        90
pF1KE2 QRWLICCFGATECEAQQTSHCLKEWCACFL
       ::::::::::::::::::::::::::::::
CCDS13 QRWLICCFGATECEAQQTSHCLKEWCACFL
               70        80        90

>>CCDS54449.1 BANF2 gene_id:140836|Hs109|chr20            (97 aa)
 initn: 639 init1: 639 opt: 639  Z-score: 921.4  bits: 175.2 E(33420): 5.5e-45
Smith-Waterman score: 639; 98.9% identity (100.0% similar) in 90 aa overlap (1-90:8-97)

                      10        20        30        40        50   
pF1KE2        MDDMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLM
              ::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MLRGTKEMDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLM
               10        20        30        40        50        60

            60        70        80        90
pF1KE2 HKNEAEFQRWLICCFGATECEAQQTSHCLKEWCACFL
       :::::::::::::::::::::::::::::::::::::
CCDS54 HKNEAEFQRWLICCFGATECEAQQTSHCLKEWCACFL
               70        80        90       

>>CCDS8125.1 BANF1 gene_id:8815|Hs109|chr11               (89 aa)
 initn: 240 init1: 240 opt: 240  Z-score: 353.7  bits: 70.0 E(33420): 2.3e-13
Smith-Waterman score: 240; 41.9% identity (72.1% similar) in 86 aa overlap (5-90:4-89)

               10        20        30        40        50        60
pF1KE2 MDDMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF
           : . : :..::.::: :  . ::.. :. .:  .:..:::..:::::...:.:  :
CCDS81  MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLF
                10        20        30        40        50         

               70        80        90
pF1KE2 QRWLICCFGATECEAQQTSHCLKEWCACFL
       ..::    ::.  ....   ::.:::  ::
CCDS81 REWLKDTCGANAKQSRDCFGCLREWCDAFL
      60        70        80         




90 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Aug 16 14:43:01 2021 done: Mon Aug 16 14:43:01 2021
 Total Scan time:  1.060 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]