FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2764, 524 aa
  1>>>pF1KE2764     524 - 524 aa - 524 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5933+/-0.000885; mu= 17.6136+/- 0.054
 mean_var=81.5456+/-16.337, 0's: 0 Z-trim(107.0): 22  B-trim: 51 in 1/51
 Lambda= 0.142028
 statistics sampled from 9444 (9453) to 9444 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.283), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(33420)
CCDS7311.1 PSAP gene_id:5660|Hs109|chr10           ( 524) 3586 744.7  6e-215
CCDS47009.1 PSAPL1 gene_id:768239|Hs109|chr4       ( 521)  957 206.0 8.7e-53


>>CCDS7311.1 PSAP gene_id:5660|Hs109|chr10                (524 aa)
 initn: 3586 init1: 3586 opt: 3586  Z-score: 3972.7  bits: 744.7 E(33420): 6e-215
Smith-Waterman score: 3586; 100.0% identity (100.0% similar) in 524 aa overlap (1-524:1-524)

               10        20        30        40        50        60
pF1KE2 MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 IKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 PQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 CKNYISQYSEIAIQMMMHMQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALELVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CKNYISQYSEIAIQMMMHMQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALELVE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 PIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 VDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVGYLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVGYLD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 RNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIG
              430       440       450       460       470       480

              490       500       510       520    
pF1KE2 ACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN
              490       500       510       520    

>>CCDS47009.1 PSAPL1 gene_id:768239|Hs109|chr4            (521 aa)
 initn: 1414 init1: 501 opt: 957  Z-score: 1061.4  bits: 206.0 E(33420): 8.7e-53
Smith-Waterman score: 1579; 44.4% identity (73.5% similar) in 532 aa overlap (3-523:4-510)

                10        20        30        40        50         
pF1KE2  MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVK
          ::.:: :::::. :.:. : .::..::.::::...::. :::: .:  .::::::.:
CCDS47 MLCALLLLPSLLGATRASPTSGPQECAKGSTVWCQDLQTAARCGAVGYCQGAVWNKPTAK
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE2 SLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILD
       :::::.:.:...:::. :. .::: .::. . :::.:::. . ::.:: .::..  .::.
CCDS47 SLPCDVCQDIAAAAGNGLNPDATESDILALVMKTCEWLPSQESSAGCKWMVDAHSSAILS
               70        80        90       100       110       120

     120        130       140       150       160       170        
pF1KE2 IIKGEM-SRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLL
       ...:   : :..::.::.::: ::.::: :          . . :  :.::::::: :: 
CCDS47 MLRGAPDSAPAQVCTALSLCEPLQRHLATL--------RPLSKEDTFEAVAPFMANGPLT
              130       140       150               160       170  

      180       190       200       210       220       230        
pF1KE2 LYPQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMA
       ..:...:.        : .::::...:. .: :::.: :...    ...:.:. ::::.:
CCDS47 FHPRQAPE--------GALCQDCVRQVSRLQEAVRSNLTLADL---NIQEQCESLGPGLA
            180               190       200          210       220 

      240       250       260       270       280       290        
pF1KE2 DICKNYISQYSEIAIQMMMHMQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALEL
        .::::. :.   : : .  . :.:.:   :::.:.   : .    ..:.. . .:.:::
CCDS47 VLCKNYLFQFFVPADQALRLLPPQELCRKGGFCEELGA-PARL---TQVVAMDGVPSLEL
             230       240       250        260          270       

      300       310       320       330       340       350        
pF1KE2 VEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQ
         : :. :.  :. : ::::  .:... . . .:..:  :  :....:: .: :...:: 
CCDS47 GLPRKQSEMQMKAGVTCEVCMNVVQKLDHWLMSNSSELMITHALERVCSVMPASITKECI
       280       290       300       310       320       330       

      360       370       380       390            400             
pF1KE2 EVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVH-----VTQPK-----DGGF
        .::::. :... :. ...:: ::....:: :.:  : .::     : .:.     .:.:
CCDS47 ILVDTYSPSLVQ-LVAKITPEKVCKFIRLC-GNRRRARAVHDAYAIVPSPEWDAENQGSF
       340        350       360        370       380       390     

      410       420       430       440       450       460        
pF1KE2 CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVE
       :. ::.:.   ..:::..:::..::.:.. :::.:: ::. :: .::..::::::: : .
CCDS47 CNGCKRLLTVSSHNLESKSTKRDILVAFKGGCSILPLPYMIQCKHFVTQYEPVLIESLKD
         400       410       420       430       440       450     

      470       480       490       500       510       520        
pF1KE2 VMDPSFVCLKIGACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN    
       .:::  :: :.::: . . :::::..:  :::.::.. :.:  ::::.::..:::     
CCDS47 MMDPVAVCKKVGACHGPRTPLLGTDQCALGPSFWCRSQEAAKLCNAVQHCQKHVWKEMHL
         460       470       480       490       500       510     

CCDS47 HAGEHA
         520 




524 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Jul  3 20:32:35 2020 done: Fri Jul  3 20:32:36 2020
 Total Scan time:  1.490 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]