Result of FASTA (omim) for
pF1KE2758
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2758, 654 aa
1>>>pF1KE2758 654 - 654 aa - 654 aa
Library: /omim/omim.rfq.tfa
64236559 residues in 92054 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6775+/-0.000488; mu= 1.2131+/- 0.031
mean_var=613.1459+/-123.399, 0's: 0 Z-trim(123.1): 517 B-trim: 0 in 0/57
Lambda= 0.051796
statistics sampled from 43491 (44036) to 43491 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.478), width: 16
Scan time: 6.240
The best scores are: opt bits E(92054)
NP_942014 (OMIM: 610004,616219) collagen alpha-1(X ( 654) 4805 374.4 7.8e-103
XP_016864225 (OMIM: 610004,616219) collagen alpha- ( 657) 4572 357.0 1.4e-97
NP_115907 (OMIM: 610004,616219) collagen alpha-1(X ( 642) 4497 351.4 6.5e-96
XP_011530637 (OMIM: 610004,616219) collagen alpha- ( 696) 4271 334.5 8.3e-91
XP_011530636 (OMIM: 610004,616219) collagen alpha- ( 696) 4271 334.5 8.3e-91
XP_011530635 (OMIM: 610004,616219) collagen alpha- ( 696) 4271 334.5 8.3e-91
XP_011530640 (OMIM: 610004,616219) collagen alpha- ( 690) 4199 329.1 3.4e-89
XP_016864224 (OMIM: 610004,616219) collagen alpha- ( 678) 4172 327.1 1.4e-88
XP_016864226 (OMIM: 610004,616219) collagen alpha- ( 583) 3467 274.3 9.2e-73
XP_011530657 (OMIM: 610004,616219) collagen alpha- ( 583) 3467 274.3 9.2e-73
XP_011530658 (OMIM: 610004,616219) collagen alpha- ( 577) 3395 269.0 3.8e-71
NP_001243003 (OMIM: 610004,616219) collagen alpha- ( 645) 3242 257.6 1.1e-67
XP_011530660 (OMIM: 610004,616219) collagen alpha- ( 535) 3131 249.2 3.2e-65
NP_001355824 (OMIM: 120350,616720) collagen alpha- ( 657) 1687 141.4 1.1e-32
NP_001355813 (OMIM: 120350,616720) collagen alpha- ( 666) 1677 140.7 1.8e-32
XP_016871178 (OMIM: 120350,616720) collagen alpha- ( 663) 1670 140.1 2.6e-32
NP_001355814 (OMIM: 120350,616720) collagen alpha- ( 651) 1656 139.1 5.3e-32
XP_016871171 (OMIM: 120350,616720) collagen alpha- ( 684) 1646 138.4 9.2e-32
XP_016871180 (OMIM: 120350,616720) collagen alpha- ( 651) 1636 137.6 1.5e-31
XP_016871170 (OMIM: 120350,616720) collagen alpha- ( 692) 1610 135.7 6e-31
NP_001307880 (OMIM: 120350,616720) collagen alpha- ( 680) 1589 134.1 1.8e-30
NP_001355826 (OMIM: 120350,616720) collagen alpha- ( 625) 1574 132.9 3.6e-30
XP_016871173 (OMIM: 120350,616720) collagen alpha- ( 680) 1573 132.9 4e-30
XP_016871176 (OMIM: 120350,616720) collagen alpha- ( 672) 1568 132.5 5.2e-30
NP_542991 (OMIM: 120350,616720) collagen alpha-1(X ( 695) 1558 131.8 8.8e-30
NP_542992 (OMIM: 120350,616720) collagen alpha-1(X ( 668) 1552 131.3 1.2e-29
XP_024303583 (OMIM: 120350,616720) collagen alpha- ( 710) 1542 130.6 2e-29
XP_011537595 (OMIM: 120350,616720) collagen alpha- ( 713) 1542 130.6 2.1e-29
XP_011537596 (OMIM: 120350,616720) collagen alpha- ( 707) 1536 130.2 2.8e-29
XP_016871168 (OMIM: 120350,616720) collagen alpha- ( 698) 1533 129.9 3.2e-29
XP_016871175 (OMIM: 120350,616720) collagen alpha- ( 675) 1525 129.3 4.8e-29
XP_016871182 (OMIM: 120350,616720) collagen alpha- ( 649) 1523 129.1 5.2e-29
XP_011537597 (OMIM: 120350,616720) collagen alpha- ( 701) 1521 129.0 6e-29
XP_016871174 (OMIM: 120350,616720) collagen alpha- ( 678) 1515 128.6 8.1e-29
XP_016869755 (OMIM: 120215,130000,130010) collagen (1715) 1511 128.9 1.7e-28
NP_001265003 (OMIM: 120215,130000,130010) collagen (1838) 1511 128.9 1.7e-28
NP_000084 (OMIM: 120215,130000,130010) collagen al (1838) 1511 128.9 1.7e-28
NP_001355812 (OMIM: 120350,616720) collagen alpha- ( 684) 1494 127.0 2.4e-28
NP_542990 (OMIM: 120350,616720) collagen alpha-1(X ( 686) 1487 126.5 3.5e-28
XP_011515191 (OMIM: 610026) collagen alpha-1(XXII) (1058) 1488 126.8 4.2e-28
XP_011515189 (OMIM: 610026) collagen alpha-1(XXII) (1264) 1488 127.0 4.6e-28
XP_016868641 (OMIM: 610026) collagen alpha-1(XXII) (1264) 1488 127.0 4.6e-28
XP_016868640 (OMIM: 610026) collagen alpha-1(XXII) (1552) 1488 127.1 5.2e-28
NP_542995 (OMIM: 120350,616720) collagen alpha-1(X ( 610) 1478 125.7 5.2e-28
XP_016868639 (OMIM: 610026) collagen alpha-1(XXII) (1564) 1488 127.1 5.2e-28
XP_011515188 (OMIM: 610026) collagen alpha-1(XXII) (1577) 1488 127.1 5.2e-28
XP_011515187 (OMIM: 610026) collagen alpha-1(XXII) (1588) 1488 127.1 5.2e-28
XP_011515186 (OMIM: 610026) collagen alpha-1(XXII) (1593) 1488 127.1 5.2e-28
XP_011515185 (OMIM: 610026) collagen alpha-1(XXII) (1606) 1488 127.1 5.3e-28
XP_016871166 (OMIM: 120350,616720) collagen alpha- ( 713) 1473 125.5 7.3e-28
>>NP_942014 (OMIM: 610004,616219) collagen alpha-1(XXV) (654 aa)
initn: 4805 init1: 4805 opt: 4805 Z-score: 1967.8 bits: 374.4 E(92054): 7.8e-103
Smith-Waterman score: 4805; 100.0% identity (100.0% similar) in 654 aa overlap (1-654:1-654)
10 20 30 40 50 60
pF1KE2 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 GPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 GPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFP
550 560 570 580 590 600
610 620 630 640 650
pF1KE2 GPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 GPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK
610 620 630 640 650
>>XP_016864225 (OMIM: 610004,616219) collagen alpha-1(XX (657 aa)
initn: 4253 init1: 4253 opt: 4572 Z-score: 1873.7 bits: 357.0 E(92054): 1.4e-97
Smith-Waterman score: 4676; 96.8% identity (96.8% similar) in 666 aa overlap (1-654:1-657)
10 20 30 40 50 60
pF1KE2 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
490 500 510 520 530 540
550 560 570 580
pF1KE2 GPMGPHGLPGPKG------------TDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLP
::::::::::::: :::::::::::::::::::::::::::::::::::
XP_016 GPMGPHGLPGPKGASGLDGKPGSRGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLP
550 560 570 580 590 600
590 600 610 620 630 640
pF1KE2 GKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPM
: ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 G---------FPGPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPM
610 620 630 640 650
650
pF1KE2 PGCWQK
::::::
XP_016 PGCWQK
>>NP_115907 (OMIM: 610004,616219) collagen alpha-1(XXV) (642 aa)
initn: 4497 init1: 4497 opt: 4497 Z-score: 1843.5 bits: 351.4 E(92054): 6.5e-96
Smith-Waterman score: 4497; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:1-615)
10 20 30 40 50 60
pF1KE2 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 GPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 GPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFP
550 560 570 580 590 600
610 620 630 640 650
pF1KE2 GPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK
:::::::::::::::
NP_115 GPRGEKGDLGEKGEKVTSPSQHVPCLILLLLSALLFSLCDSI
610 620 630 640
>>XP_011530637 (OMIM: 610004,616219) collagen alpha-1(XX (696 aa)
initn: 5639 init1: 4252 opt: 4271 Z-score: 1751.9 bits: 334.5 E(92054): 8.3e-91
Smith-Waterman score: 4533; 92.4% identity (92.9% similar) in 686 aa overlap (1-644:1-686)
10 20 30 40 50 60
pF1KE2 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
490 500 510 520 530 540
550 560
pF1KE2 GPMGPHGLPGPKG---------------------------------------TDGPMGPH
::::::::::::: ::::::::
XP_011 GPMGPHGLPGPKGEPGLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPH
550 560 570 580 590 600
570 580 590 600 610 620
pF1KE2 GPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::: .: :
XP_011 GPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGEKGKK
610 620 630 640 650 660
630 640 650
pF1KE2 GEKG---EPGQPGLDGLDAPCQLGPDGLPMPGCWQK
:.:: : :. : :::::: ::::
XP_011 GKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
670 680 690
>>XP_011530636 (OMIM: 610004,616219) collagen alpha-1(XX (696 aa)
initn: 5639 init1: 4252 opt: 4271 Z-score: 1751.9 bits: 334.5 E(92054): 8.3e-91
Smith-Waterman score: 4533; 92.4% identity (92.9% similar) in 686 aa overlap (1-644:1-686)
10 20 30 40 50 60
pF1KE2 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
490 500 510 520 530 540
550 560
pF1KE2 GPMGPHGLPGPKG---------------------------------------TDGPMGPH
::::::::::::: ::::::::
XP_011 GPMGPHGLPGPKGEPGLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPH
550 560 570 580 590 600
570 580 590 600 610 620
pF1KE2 GPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::: .: :
XP_011 GPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGEKGKK
610 620 630 640 650 660
630 640 650
pF1KE2 GEKG---EPGQPGLDGLDAPCQLGPDGLPMPGCWQK
:.:: : :. : :::::: ::::
XP_011 GKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
670 680 690
>>XP_011530635 (OMIM: 610004,616219) collagen alpha-1(XX (696 aa)
initn: 5639 init1: 4252 opt: 4271 Z-score: 1751.9 bits: 334.5 E(92054): 8.3e-91
Smith-Waterman score: 4533; 92.4% identity (92.9% similar) in 686 aa overlap (1-644:1-686)
10 20 30 40 50 60
pF1KE2 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
490 500 510 520 530 540
550 560
pF1KE2 GPMGPHGLPGPKG---------------------------------------TDGPMGPH
::::::::::::: ::::::::
XP_011 GPMGPHGLPGPKGEPGLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPH
550 560 570 580 590 600
570 580 590 600 610 620
pF1KE2 GPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::: .: :
XP_011 GPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGEKGKK
610 620 630 640 650 660
630 640 650
pF1KE2 GEKG---EPGQPGLDGLDAPCQLGPDGLPMPGCWQK
:.:: : :. : :::::: ::::
XP_011 GKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
670 680 690
>>XP_011530640 (OMIM: 610004,616219) collagen alpha-1(XX (690 aa)
initn: 4739 init1: 3313 opt: 4199 Z-score: 1722.8 bits: 329.1 E(92054): 3.4e-89
Smith-Waterman score: 4461; 91.5% identity (92.0% similar) in 686 aa overlap (1-644:1-680)
10 20 30 40 50 60
pF1KE2 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_011 PAGPPGKRGKRGRRGESGPPG------PPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
130 140 150 160 170
190 200 210 220 230 240
pF1KE2 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE2 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE2 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE2 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
420 430 440 450 460 470
490 500 510 520 530 540
pF1KE2 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
480 490 500 510 520 530
550 560
pF1KE2 GPMGPHGLPGPKG---------------------------------------TDGPMGPH
::::::::::::: ::::::::
XP_011 GPMGPHGLPGPKGEPGLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPH
540 550 560 570 580 590
570 580 590 600 610 620
pF1KE2 GPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::: .: :
XP_011 GPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGEKGKK
600 610 620 630 640 650
630 640 650
pF1KE2 GEKG---EPGQPGLDGLDAPCQLGPDGLPMPGCWQK
:.:: : :. : :::::: ::::
XP_011 GKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
660 670 680 690
>>XP_016864224 (OMIM: 610004,616219) collagen alpha-1(XX (678 aa)
initn: 6564 init1: 3301 opt: 4172 Z-score: 1712.0 bits: 327.1 E(92054): 1.4e-88
Smith-Waterman score: 4550; 92.2% identity (92.2% similar) in 693 aa overlap (1-654:1-678)
10 20 30 40 50 60
pF1KE2 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_016 PAGPPGKRGKRGRRGESGPPG------PPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
130 140 150 160 170
190 200 210 220 230 240
pF1KE2 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE2 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE2 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQK
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE2 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGL
420 430 440 450 460 470
490 500 510 520 530 540
pF1KE2 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPP
480 490 500 510 520 530
550 560
pF1KE2 GPMGPHGLPGPKG---------------------------------------TDGPMGPH
::::::::::::: ::::::::
XP_016 GPMGPHGLPGPKGEPGLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPH
540 550 560 570 580 590
570 580 590 600 610 620
pF1KE2 GPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVK
:::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_016 GPAGPKGERGEKGAMGEPGPRGPYGLPG---------FPGPRGEKGDLGEKGEKGFRGVK
600 610 620 630 640
630 640 650
pF1KE2 GEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK
:::::::::::::::::::::::::::::::::
XP_016 GEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK
650 660 670
>>XP_016864226 (OMIM: 610004,616219) collagen alpha-1(XX (583 aa)
initn: 4831 init1: 3444 opt: 3467 Z-score: 1427.9 bits: 274.3 E(92054): 9.2e-73
Smith-Waterman score: 3729; 90.0% identity (90.5% similar) in 571 aa overlap (120-644:3-573)
90 100 110 120 130 140
pF1KE2 QEKVERLLAQKSYEHMAKIRIAREAPSECNCP----AGPPGKRGKRGRRGESGPPGQPGP
:: :::::::::::::::::::::::
XP_016 MGCPLMTMPGPPGKRGKRGRRGESGPPGQPGP
10 20 30
150 160 170 180 190 200
pF1KE2 QGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE2 RGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSIGAPGIPGMNGQKGEPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSIGAPGIPGMNGQKGEPGL
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE2 PGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQK
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE2 GEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRGERGEPGAPGPKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRGERGEPGAPGPKG
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE2 KQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEALQRITTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEALQRITTL
280 290 300 310 320 330
450 460 470 480 490 500
pF1KE2 TVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGGIGLPGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGGIGLPGLP
340 350 360 370 380 390
510 520 530 540 550
pF1KE2 GANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKG------------
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGVKGLKG
400 410 420 430 440 450
560 570 580
pF1KE2 ---------------------------TDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYG
:::::::::::::::::::::::::::::::::
XP_016 EPGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYG
460 470 480 490 500 510
590 600 610 620 630 640
pF1KE2 LPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVKGEKG---EPGQPGLDGLDAPCQLGP
:::::::::::::::::::::::::::::: .: ::.:: : :. : :::::: :::
XP_016 LPGKDGEPGLDGFPGPRGEKGDLGEKGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGP
520 530 540 550 560 570
650
pF1KE2 DGLPMPGCWQK
:
XP_016 DGLPMPGCWQK
580
>>XP_011530657 (OMIM: 610004,616219) collagen alpha-1(XX (583 aa)
initn: 4831 init1: 3444 opt: 3467 Z-score: 1427.9 bits: 274.3 E(92054): 9.2e-73
Smith-Waterman score: 3729; 90.0% identity (90.5% similar) in 571 aa overlap (120-644:3-573)
90 100 110 120 130 140
pF1KE2 QEKVERLLAQKSYEHMAKIRIAREAPSECNCP----AGPPGKRGKRGRRGESGPPGQPGP
:: :::::::::::::::::::::::
XP_011 MGCPLMTMPGPPGKRGKRGRRGESGPPGQPGP
10 20 30
150 160 170 180 190 200
pF1KE2 QGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE2 RGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSIGAPGIPGMNGQKGEPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSIGAPGIPGMNGQKGEPGL
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE2 PGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQK
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE2 GEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRGERGEPGAPGPKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRGERGEPGAPGPKG
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE2 KQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEALQRITTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEALQRITTL
280 290 300 310 320 330
450 460 470 480 490 500
pF1KE2 TVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGGIGLPGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGGIGLPGLP
340 350 360 370 380 390
510 520 530 540 550
pF1KE2 GANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKG------------
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGVKGLKG
400 410 420 430 440 450
560 570 580
pF1KE2 ---------------------------TDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYG
:::::::::::::::::::::::::::::::::
XP_011 EPGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYG
460 470 480 490 500 510
590 600 610 620 630 640
pF1KE2 LPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVKGEKG---EPGQPGLDGLDAPCQLGP
:::::::::::::::::::::::::::::: .: ::.:: : :. : :::::: :::
XP_011 LPGKDGEPGLDGFPGPRGEKGDLGEKGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGP
520 530 540 550 560 570
650
pF1KE2 DGLPMPGCWQK
:
XP_011 DGLPMPGCWQK
580
654 residues in 1 query sequences
64236559 residues in 92054 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Aug 1 17:01:44 2019 done: Thu Aug 1 17:01:45 2019
Total Scan time: 6.240 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]