Result of FASTA (omim) for
pF1KE2730
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2730, 219 aa
1>>>pF1KE2730 219 - 219 aa - 219 aa
Library: /omim/omim.rfq.tfa
64704883 residues in 91410 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9976+/-0.000373; mu= 15.1136+/- 0.023
mean_var=56.7742+/-11.636, 0's: 0 Z-trim(112.0): 23 B-trim: 568 in 1/49
Lambda= 0.170215
statistics sampled from 21557 (21570) to 21557 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.236), width: 16
Scan time: 2.580
The best scores are: opt bits E(91410)
XP_024305807 (OMIM: 611541) sorting nexin-27 isofo ( 342) 1524 382.5 5e-106
XP_005245568 (OMIM: 611541) sorting nexin-27 isofo ( 342) 1524 382.5 5e-106
XP_016857906 (OMIM: 611541) sorting nexin-27 isofo ( 407) 1524 382.5 5.8e-106
NP_112180 (OMIM: 611541) sorting nexin-27 isoform ( 528) 1524 382.6 7.2e-106
XP_024305806 (OMIM: 611541) sorting nexin-27 isofo ( 355) 1510 379.1 5.6e-105
XP_011508327 (OMIM: 611541) sorting nexin-27 isofo ( 420) 1510 379.1 6.4e-105
XP_005245567 (OMIM: 611541) sorting nexin-27 isofo ( 438) 1510 379.1 6.7e-105
XP_011508326 (OMIM: 611541) sorting nexin-27 isofo ( 440) 1510 379.1 6.7e-105
NP_001317652 (OMIM: 611541) sorting nexin-27 isofo ( 541) 1510 379.1 8e-105
XP_011508328 (OMIM: 611541) sorting nexin-27 isofo ( 419) 491 128.9 1.4e-29
>>XP_024305807 (OMIM: 611541) sorting nexin-27 isoform X (342 aa)
initn: 1524 init1: 1524 opt: 1524 Z-score: 2025.1 bits: 382.5 E(91410): 5e-106
Smith-Waterman score: 1524; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:124-342)
10 20 30
pF1KE2 MDSTTVNYFALFEVISHSFVRKLAPNEFPH
::::::::::::::::::::::::::::::
XP_024 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
100 110 120 130 140 150
40 50 60 70 80 90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
220 230 240 250 260 270
160 170 180 190 200 210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
280 290 300 310 320 330
pF1KE2 ELKWRKEEY
:::::::::
XP_024 ELKWRKEEY
340
>>XP_005245568 (OMIM: 611541) sorting nexin-27 isoform X (342 aa)
initn: 1524 init1: 1524 opt: 1524 Z-score: 2025.1 bits: 382.5 E(91410): 5e-106
Smith-Waterman score: 1524; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:124-342)
10 20 30
pF1KE2 MDSTTVNYFALFEVISHSFVRKLAPNEFPH
::::::::::::::::::::::::::::::
XP_005 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
100 110 120 130 140 150
40 50 60 70 80 90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
220 230 240 250 260 270
160 170 180 190 200 210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
280 290 300 310 320 330
pF1KE2 ELKWRKEEY
:::::::::
XP_005 ELKWRKEEY
340
>>XP_016857906 (OMIM: 611541) sorting nexin-27 isoform X (407 aa)
initn: 1524 init1: 1524 opt: 1524 Z-score: 2023.9 bits: 382.5 E(91410): 5.8e-106
Smith-Waterman score: 1524; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:189-407)
10 20 30
pF1KE2 MDSTTVNYFALFEVISHSFVRKLAPNEFPH
::::::::::::::::::::::::::::::
XP_016 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
160 170 180 190 200 210
40 50 60 70 80 90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
220 230 240 250 260 270
100 110 120 130 140 150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
280 290 300 310 320 330
160 170 180 190 200 210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
340 350 360 370 380 390
pF1KE2 ELKWRKEEY
:::::::::
XP_016 ELKWRKEEY
400
>>NP_112180 (OMIM: 611541) sorting nexin-27 isoform 2 [H (528 aa)
initn: 1524 init1: 1524 opt: 1524 Z-score: 2022.2 bits: 382.6 E(91410): 7.2e-106
Smith-Waterman score: 1524; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:310-528)
10 20 30
pF1KE2 MDSTTVNYFALFEVISHSFVRKLAPNEFPH
::::::::::::::::::::::::::::::
NP_112 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
280 290 300 310 320 330
40 50 60 70 80 90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
340 350 360 370 380 390
100 110 120 130 140 150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
400 410 420 430 440 450
160 170 180 190 200 210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
460 470 480 490 500 510
pF1KE2 ELKWRKEEY
:::::::::
NP_112 ELKWRKEEY
520
>>XP_024305806 (OMIM: 611541) sorting nexin-27 isoform X (355 aa)
initn: 1510 init1: 1510 opt: 1510 Z-score: 2006.3 bits: 379.1 E(91410): 5.6e-105
Smith-Waterman score: 1510; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:124-340)
10 20 30
pF1KE2 MDSTTVNYFALFEVISHSFVRKLAPNEFPH
::::::::::::::::::::::::::::::
XP_024 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
100 110 120 130 140 150
40 50 60 70 80 90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
220 230 240 250 260 270
160 170 180 190 200 210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
280 290 300 310 320 330
pF1KE2 ELKWRKEEY
:::::::
XP_024 ELKWRKENIFQMARSQQRDVAT
340 350
>>XP_011508327 (OMIM: 611541) sorting nexin-27 isoform X (420 aa)
initn: 1510 init1: 1510 opt: 1510 Z-score: 2005.2 bits: 379.1 E(91410): 6.4e-105
Smith-Waterman score: 1510; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:189-405)
10 20 30
pF1KE2 MDSTTVNYFALFEVISHSFVRKLAPNEFPH
::::::::::::::::::::::::::::::
XP_011 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
160 170 180 190 200 210
40 50 60 70 80 90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
220 230 240 250 260 270
100 110 120 130 140 150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
280 290 300 310 320 330
160 170 180 190 200 210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
340 350 360 370 380 390
pF1KE2 ELKWRKEEY
:::::::
XP_011 ELKWRKENIFQMARSQQRDVAT
400 410 420
>>XP_005245567 (OMIM: 611541) sorting nexin-27 isoform X (438 aa)
initn: 1510 init1: 1510 opt: 1510 Z-score: 2004.9 bits: 379.1 E(91410): 6.7e-105
Smith-Waterman score: 1510; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:207-423)
10 20 30
pF1KE2 MDSTTVNYFALFEVISHSFVRKLAPNEFPH
::::::::::::::::::::::::::::::
XP_005 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
180 190 200 210 220 230
40 50 60 70 80 90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
240 250 260 270 280 290
100 110 120 130 140 150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
300 310 320 330 340 350
160 170 180 190 200 210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
360 370 380 390 400 410
pF1KE2 ELKWRKEEY
:::::::
XP_005 ELKWRKENIFQMARSQQRDVAT
420 430
>>XP_011508326 (OMIM: 611541) sorting nexin-27 isoform X (440 aa)
initn: 1510 init1: 1510 opt: 1510 Z-score: 2004.8 bits: 379.1 E(91410): 6.7e-105
Smith-Waterman score: 1510; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:209-425)
10 20 30
pF1KE2 MDSTTVNYFALFEVISHSFVRKLAPNEFPH
::::::::::::::::::::::::::::::
XP_011 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
180 190 200 210 220 230
40 50 60 70 80 90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
240 250 260 270 280 290
100 110 120 130 140 150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
300 310 320 330 340 350
160 170 180 190 200 210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
360 370 380 390 400 410
pF1KE2 ELKWRKEEY
:::::::
XP_011 ELKWRKENIFQMARSQQRDVAT
420 430 440
>>NP_001317652 (OMIM: 611541) sorting nexin-27 isoform 1 (541 aa)
initn: 1510 init1: 1510 opt: 1510 Z-score: 2003.5 bits: 379.1 E(91410): 8e-105
Smith-Waterman score: 1510; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:310-526)
10 20 30
pF1KE2 MDSTTVNYFALFEVISHSFVRKLAPNEFPH
::::::::::::::::::::::::::::::
NP_001 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
280 290 300 310 320 330
40 50 60 70 80 90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
340 350 360 370 380 390
100 110 120 130 140 150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
400 410 420 430 440 450
160 170 180 190 200 210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
460 470 480 490 500 510
pF1KE2 ELKWRKEEY
:::::::
NP_001 ELKWRKENIFQMARSQQRDVAT
520 530 540
>>XP_011508328 (OMIM: 611541) sorting nexin-27 isoform X (419 aa)
initn: 491 init1: 491 opt: 491 Z-score: 652.8 bits: 128.9 E(91410): 1.4e-29
Smith-Waterman score: 491; 100.0% identity (100.0% similar) in 74 aa overlap (1-74:310-383)
10 20 30
pF1KE2 MDSTTVNYFALFEVISHSFVRKLAPNEFPH
::::::::::::::::::::::::::::::
XP_011 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
280 290 300 310 320 330
40 50 60 70 80 90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQIPAASLHFPLLKMRHQ
340 350 360 370 380 390
100 110 120 130 140 150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
XP_011 LSFLLHSYHIPIPFSSLPSP
400 410
219 residues in 1 query sequences
64704883 residues in 91410 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Jul 14 21:19:13 2018 done: Sat Jul 14 21:19:13 2018
Total Scan time: 2.580 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]