FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2730, 219 aa
  1>>>pF1KE2730     219 - 219 aa - 219 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2970+/-0.000867; mu= 13.2966+/- 0.052
 mean_var=57.0566+/-11.284, 0's: 0 Z-trim(104.7): 12  B-trim: 0 in 0/49
 Lambda= 0.169794
 statistics sampled from 8150 (8154) to 8150 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.244), width:  16
 Scan time:  0.870

The best scores are:                                      opt bits E(33420)
CCDS1001.1 SNX27 gene_id:81609|Hs109|chr1          ( 528) 1524 381.6 5.1e-106
CCDS81377.1 SNX27 gene_id:81609|Hs109|chr1         ( 541) 1510 378.2 5.6e-105


>>CCDS1001.1 SNX27 gene_id:81609|Hs109|chr1               (528 aa)
 initn: 1524 init1: 1524 opt: 1524  Z-score: 2017.0  bits: 381.6 E(33420): 5.1e-106
Smith-Waterman score: 1524; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:310-528)

                                             10        20        30
pF1KE2                               MDSTTVNYFALFEVISHSFVRKLAPNEFPH
                                     ::::::::::::::::::::::::::::::
CCDS10 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
     280       290       300       310       320       330         

               40        50        60        70        80        90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
     340       350       360       370       380       390         

              100       110       120       130       140       150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
     400       410       420       430       440       450         

              160       170       180       190       200       210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
     460       470       480       490       500       510         

                
pF1KE2 ELKWRKEEY
       :::::::::
CCDS10 ELKWRKEEY
     520        

>>CCDS81377.1 SNX27 gene_id:81609|Hs109|chr1              (541 aa)
 initn: 1510 init1: 1510 opt: 1510  Z-score: 1998.3  bits: 378.2 E(33420): 5.6e-105
Smith-Waterman score: 1510; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:310-526)

                                             10        20        30
pF1KE2                               MDSTTVNYFALFEVISHSFVRKLAPNEFPH
                                     ::::::::::::::::::::::::::::::
CCDS81 ALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPH
     280       290       300       310       320       330         

               40        50        60        70        80        90
pF1KE2 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKS
     340       350       360       370       380       390         

              100       110       120       130       140       150
pF1KE2 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 YQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE
     400       410       420       430       440       450         

              160       170       180       190       200       210
pF1KE2 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC
     460       470       480       490       500       510         

                             
pF1KE2 ELKWRKEEY             
       :::::::               
CCDS81 ELKWRKENIFQMARSQQRDVAT
     520       530       540 




219 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Jul 14 21:19:12 2018 done: Sat Jul 14 21:19:13 2018
 Total Scan time:  0.870 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]