FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2666, 255 aa
  1>>>pF1KE2666     255 - 255 aa - 255 aa
Library: /omim/omim.rfq.tfa
  61127809 residues in 85815 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2293+/-0.000341; mu= 6.3060+/- 0.021
 mean_var=116.1159+/-22.728, 0's: 0 Z-trim(117.4): 2  B-trim: 0 in 0/58
 Lambda= 0.119022
 statistics sampled from 29505 (29507) to 29505 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.344), width:  16
 Scan time:  6.310

The best scores are:                                      opt bits E(85815)
NP_659497 (OMIM: 616673) spindle and kinetochore-a ( 255) 1661 295.6 5.7e-80
NP_001034624 (OMIM: 616673) spindle and kinetochor ( 255) 1661 295.6 5.7e-80


>>NP_659497 (OMIM: 616673) spindle and kinetochore-assoc  (255 aa)
 initn: 1661 init1: 1661 opt: 1661  Z-score: 1556.7  bits: 295.6 E(85815): 5.7e-80
Smith-Waterman score: 1661; 100.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255)

               10        20        30        40        50        60
pF1KE2 MASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 MASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QYQEQTNNSLKELCESLEEDYKDIEHLKENVPSHLPQVTVTQSCVKGSDLDPEEPIKVEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 QYQEQTNNSLKELCESLEEDYKDIEHLKENVPSHLPQVTVTQSCVKGSDLDPEEPIKVEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 PEPVKKPPKEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQINDVIKEINKAVISKYKILH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 PEPVKKPPKEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQINDVIKEINKAVISKYKILH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 QPKKSMNSVTRNLYHRFIDEETKDTKGRYFIVEADIKEFTTLKADKKFHVLLNILRHCRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 QPKKSMNSVTRNLYHRFIDEETKDTKGRYFIVEADIKEFTTLKADKKFHVLLNILRHCRR
              190       200       210       220       230       240

              250     
pF1KE2 LSEVRGGGLTRYVIT
       :::::::::::::::
NP_659 LSEVRGGGLTRYVIT
              250     

>>NP_001034624 (OMIM: 616673) spindle and kinetochore-as  (255 aa)
 initn: 1661 init1: 1661 opt: 1661  Z-score: 1556.7  bits: 295.6 E(85815): 5.7e-80
Smith-Waterman score: 1661; 100.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255)

               10        20        30        40        50        60
pF1KE2 MASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QYQEQTNNSLKELCESLEEDYKDIEHLKENVPSHLPQVTVTQSCVKGSDLDPEEPIKVEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYQEQTNNSLKELCESLEEDYKDIEHLKENVPSHLPQVTVTQSCVKGSDLDPEEPIKVEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 PEPVKKPPKEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQINDVIKEINKAVISKYKILH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEPVKKPPKEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQINDVIKEINKAVISKYKILH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 QPKKSMNSVTRNLYHRFIDEETKDTKGRYFIVEADIKEFTTLKADKKFHVLLNILRHCRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPKKSMNSVTRNLYHRFIDEETKDTKGRYFIVEADIKEFTTLKADKKFHVLLNILRHCRR
              190       200       210       220       230       240

              250     
pF1KE2 LSEVRGGGLTRYVIT
       :::::::::::::::
NP_001 LSEVRGGGLTRYVIT
              250     




255 residues in 1 query   sequences
61127809 residues in 85815 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Jan 12 11:37:20 2017 done: Thu Jan 12 11:37:21 2017
 Total Scan time:  6.310 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]