FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2666, 255 aa
  1>>>pF1KE2666     255 - 255 aa - 255 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9606+/-0.000838; mu= 7.8081+/- 0.051
 mean_var=109.1208+/-21.210, 0's: 0 Z-trim(109.8): 4  B-trim: 0 in 0/55
 Lambda= 0.122778
 statistics sampled from 11129 (11130) to 11129 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.342), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS11946.1 SKA1 gene_id:220134|Hs108|chr18        ( 255) 1661 304.4   5e-83


>>CCDS11946.1 SKA1 gene_id:220134|Hs108|chr18             (255 aa)
 initn: 1661 init1: 1661 opt: 1661  Z-score: 1604.0  bits: 304.4 E(32554): 5e-83
Smith-Waterman score: 1661; 100.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255)

               10        20        30        40        50        60
pF1KE2 MASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QYQEQTNNSLKELCESLEEDYKDIEHLKENVPSHLPQVTVTQSCVKGSDLDPEEPIKVEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QYQEQTNNSLKELCESLEEDYKDIEHLKENVPSHLPQVTVTQSCVKGSDLDPEEPIKVEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 PEPVKKPPKEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQINDVIKEINKAVISKYKILH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PEPVKKPPKEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQINDVIKEINKAVISKYKILH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 QPKKSMNSVTRNLYHRFIDEETKDTKGRYFIVEADIKEFTTLKADKKFHVLLNILRHCRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QPKKSMNSVTRNLYHRFIDEETKDTKGRYFIVEADIKEFTTLKADKKFHVLLNILRHCRR
              190       200       210       220       230       240

              250     
pF1KE2 LSEVRGGGLTRYVIT
       :::::::::::::::
CCDS11 LSEVRGGGLTRYVIT
              250     




255 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Jan 12 11:37:19 2017 done: Thu Jan 12 11:37:19 2017
 Total Scan time:  2.420 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]