FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2664, 144 aa
  1>>>pF1KE2664     144 - 144 aa - 144 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9125+/-0.000645; mu= 13.8671+/- 0.039
 mean_var=57.6413+/-11.900, 0's: 0 Z-trim(109.8): 13  B-trim: 0 in 0/51
 Lambda= 0.168930
 statistics sampled from 11104 (11112) to 11104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.341), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS10917.1 TMEM170A gene_id:124491|Hs108|chr16    ( 144)  939 236.2 5.2e-63
CCDS76900.1 TMEM170A gene_id:124491|Hs108|chr16    ( 106)  644 164.3 1.8e-41
CCDS76901.1 TMEM170A gene_id:124491|Hs108|chr16    ( 121)  543 139.7 5.1e-34
CCDS43425.1 TMEM170B gene_id:100113407|Hs108|chr6  ( 132)  372 98.0 1.9e-21
CCDS76899.1 TMEM170A gene_id:124491|Hs108|chr16    (  76)  258 70.1 2.8e-13


>>CCDS10917.1 TMEM170A gene_id:124491|Hs108|chr16         (144 aa)
 initn: 939 init1: 939 opt: 939  Z-score: 1244.8  bits: 236.2 E(32554): 5.2e-63
Smith-Waterman score: 939; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KE2 MEREGSGGSGGSAGLLQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEREGSGGSGGSAGLLQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 FHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFE
               70        80        90       100       110       120

              130       140    
pF1KE2 ALTLGTGQTFCVLVVSFLRILATL
       ::::::::::::::::::::::::
CCDS10 ALTLGTGQTFCVLVVSFLRILATL
              130       140    

>>CCDS76900.1 TMEM170A gene_id:124491|Hs108|chr16         (106 aa)
 initn: 644 init1: 644 opt: 644  Z-score: 858.2  bits: 164.3 E(32554): 1.8e-41
Smith-Waterman score: 644; 100.0% identity (100.0% similar) in 100 aa overlap (45-144:7-106)

           20        30        40        50        60        70    
pF1KE2 LLQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLFFHVPAGLLALFTLR
                                     ::::::::::::::::::::::::::::::
CCDS76                         MQRAAAEMWYGVFLWALVSSLFFHVPAGLLALFTLR
                                       10        20        30      

           80        90       100       110       120       130    
pF1KE2 HHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFEALTLGTGQTFCVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFEALTLGTGQTFCVLV
         40        50        60        70        80        90      

          140    
pF1KE2 VSFLRILATL
       ::::::::::
CCDS76 VSFLRILATL
        100      

>>CCDS76901.1 TMEM170A gene_id:124491|Hs108|chr16         (121 aa)
 initn: 787 init1: 543 opt: 543  Z-score: 724.3  bits: 139.7 E(32554): 5.1e-34
Smith-Waterman score: 745; 84.0% identity (84.0% similar) in 144 aa overlap (1-144:1-121)

               10        20        30        40        50        60
pF1KE2 MEREGSGGSGGSAGLLQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MEREGSGGSGGSAGLLQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 FHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFE
       :::::::::::::::::::                       ::::::::::::::::::
CCDS76 FHVPAGLLALFTLRHHKYG-----------------------AAIAGVYRAAGKEMIPFE
               70                               80        90       

              130       140    
pF1KE2 ALTLGTGQTFCVLVVSFLRILATL
       ::::::::::::::::::::::::
CCDS76 ALTLGTGQTFCVLVVSFLRILATL
       100       110       120 

>>CCDS43425.1 TMEM170B gene_id:100113407|Hs108|chr6       (132 aa)
 initn: 391 init1: 371 opt: 372  Z-score: 498.5  bits: 98.0 E(32554): 1.9e-21
Smith-Waterman score: 377; 47.5% identity (72.7% similar) in 139 aa overlap (7-144:5-132)

               10         20        30        40        50         
pF1KE2 MEREGSGGSGGSAGL-LQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSL
             ::. .  .: .::.::: .     .::.  : :      :::: .::::: :::
CCDS43   MKAEGGDHSMINLSVQQVLSLWA-----HGTVLRNLT------EMWYWIFLWALFSSL
                 10        20             30              40       

      60        70        80        90       100       110         
pF1KE2 FFHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPF
       : :  ::.: .  :..:. :: .::  . .:... .:....::::.::.::.:::.: :.
CCDS43 FVHGAAGVLMFVMLQRHRQGRVISVIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPL
        50        60        70        80        90       100       

     120       130       140    
pF1KE2 EALTLGTGQTFCVLVVSFLRILATL
       :::. :.:::  .:..:: ::::::
CCDS43 EALVWGVGQTVLTLIISFSRILATL
       110       120       130  

>>CCDS76899.1 TMEM170A gene_id:124491|Hs108|chr16         (76 aa)
 initn: 486 init1: 258 opt: 258  Z-score: 351.9  bits: 70.1 E(32554): 2.8e-13
Smith-Waterman score: 444; 76.8% identity (76.8% similar) in 99 aa overlap (46-144:1-76)

          20        30        40        50        60        70     
pF1KE2 LQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLFFHVPAGLLALFTLRH
                                     ::::::::::::::::::::::::::::::
CCDS76                               MWYGVFLWALVSSLFFHVPAGLLALFTLRH
                                             10        20        30

          80        90       100       110       120       130     
pF1KE2 HKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFEALTLGTGQTFCVLVV
       ::::                       :::::::::::::::::::::::::::::::::
CCDS76 HKYG-----------------------AAIAGVYRAAGKEMIPFEALTLGTGQTFCVLVV
                                      40        50        60       

         140    
pF1KE2 SFLRILATL
       :::::::::
CCDS76 SFLRILATL
        70      




144 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Jan 12 11:37:52 2017 done: Thu Jan 12 11:37:52 2017
 Total Scan time:  1.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]