Result of FASTA (ccds) for
pF1KE2662
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2662, 247 aa
1>>>pF1KE2662 247 - 247 aa - 247 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7006+/-0.000773; mu= 17.9342+/- 0.046
mean_var=63.9726+/-13.167, 0's: 0 Z-trim(108.1): 19 B-trim: 0 in 0/49
Lambda= 0.160353
statistics sampled from 9966 (9977) to 9966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.306), width: 16
Scan time: 1.600
The best scores are: opt bits E(32554)
CCDS33691.1 LHFPL4 gene_id:375323|Hs108|chr3 ( 247) 1704 402.5 1.4e-112
CCDS4812.1 LHFPL5 gene_id:222662|Hs108|chr6 ( 219) 994 238.2 3.5e-63
CCDS9369.1 LHFP gene_id:10186|Hs108|chr13 ( 200) 331 84.8 4.8e-17
CCDS4042.1 LHFPL2 gene_id:10184|Hs108|chr5 ( 228) 282 73.5 1.4e-13
CCDS14562.1 LHFPL1 gene_id:340596|Hs108|chrX ( 220) 280 73.0 1.8e-13
>>CCDS33691.1 LHFPL4 gene_id:375323|Hs108|chr3 (247 aa)
initn: 1704 init1: 1704 opt: 1704 Z-score: 2134.9 bits: 402.5 E(32554): 1.4e-112
Smith-Waterman score: 1704; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE2 MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 LFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFFFCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFFFCN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 IIGILNALILSFLAFVLGNRQTDLLQEELKPENKDFVGSTVSSVLRPGGDVSGWGVLPCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IIGILNALILSFLAFVLGNRQTDLLQEELKPENKDFVGSTVSSVLRPGGDVSGWGVLPCP
190 200 210 220 230 240
pF1KE2 VAHSQGP
:::::::
CCDS33 VAHSQGP
>>CCDS4812.1 LHFPL5 gene_id:222662|Hs108|chr6 (219 aa)
initn: 989 init1: 649 opt: 994 Z-score: 1247.9 bits: 238.2 E(32554): 3.5e-63
Smith-Waterman score: 994; 61.8% identity (84.8% similar) in 217 aa overlap (1-217:4-219)
10 20 30 40 50
pF1KE2 MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPG
.::.:::.:.:: .:.:::::.::.:. .::::... ...::::::.::::.::. :
CCDS48 MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 YFGLFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFF
::::: ::::. :.. :: :.:. :::.::: :::.: ::: :.: ::.: : ::::::
CCDS48 YFGLFSYCVGNVLSS-ELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFF
70 80 90 100 110
120 130 140 150 160 170
pF1KE2 FCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAY
.::::::::::::::: :: :..::...:::::. .: ::: .::::.:: :..:::.
CCDS48 ICNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 ILAIIGILNALILSFLAFVLGNRQTDLLQEELKPENKDFVGSTVSSVLRPGGDVSGWGVL
.:::..: .:::::::::::: :: :: .. : .. . :
CCDS48 MLAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV
180 190 200 210
240
pF1KE2 PCPVAHSQGP
>>CCDS9369.1 LHFP gene_id:10186|Hs108|chr13 (200 aa)
initn: 290 init1: 190 opt: 331 Z-score: 419.5 bits: 84.8 E(32554): 4.8e-17
Smith-Waterman score: 331; 29.9% identity (60.8% similar) in 194 aa overlap (23-201:9-195)
10 20 30 40 50 60
pF1KE2 MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFG
::.::.... : . : :..:::. : . :: ::
CCDS93 MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGS-QLGKPVSFG
10 20 30 40
70 80 90 100
pF1KE2 LFHYC-VGSGLAGRELT-----CRGSFTDFSTIPSSAFK--------AAAFFVLLSMVLI
:. : .:.. : : ...:. :::. .. . ....:.... .
CCDS93 TFRRCSYPVHDESRQMMVMVEEC-GRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTAL
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE2 LGCITCFSLFFFCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKY
.:: : : .. . :: .. . .:.:..: . :: ..: :::.: .:. :: .:..
CCDS93 MGC--CVSDLI---SRTVGRVAGGIQFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQF
110 120 130 140 150
170 180 190 200 210 220
pF1KE2 SLGDCSVRWAYILAIIGILNALIL-SFLAFVLGNRQTDLLQEELKPENKDFVGSTVSSVL
.:: : . ::: . : :..: ..:: :..:
CCDS93 DLGKCEIGWAYYCTGAGATAAMLLCTWLACFSGKKQKHYPY
160 170 180 190 200
230 240
pF1KE2 RPGGDVSGWGVLPCPVAHSQGP
>>CCDS4042.1 LHFPL2 gene_id:10184|Hs108|chr5 (228 aa)
initn: 142 init1: 142 opt: 282 Z-score: 357.5 bits: 73.5 E(32554): 1.4e-13
Smith-Waterman score: 306; 26.8% identity (60.5% similar) in 228 aa overlap (14-217:3-225)
10 20 30 40 50
pF1KE2 MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYW-VGDSVS-------
: . . :.. ::....: :. ....:.. : .: . :
CCDS40 MCHVIVTCRSM--LWTLLSIVVAFAELIAFMSADWLIGKARSRGGVEPA
10 20 30 40
60 70 80 90 100
pF1KE2 -----TPKPGY--FGLFHYCV---GSGLAGRELTCRGSFTD-FSTIPSSAFKAAAFFVLL
.:.: . .:.. :. : :. : : ... :. : :. ..:.:.:. .
CCDS40 GPGGGSPEPYHPTLGIYARCIRNPGVQHFQRDTLC-GPYAESFGEIASGFWQATAIFLAV
50 60 70 80 90 100
110 120 130 140 150
pF1KE2 SMVLILGCITCFSLFFFCNTA----TVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRD
. ..:: .. :.: .: . .....:. .: .:.: :.:: ...: :: . :
CCDS40 G-IFILCMVALVSVFTMCVQSIMKKSIFNVCGLLQGIAGLFLILGLILYPAGWGCQKAID
110 120 130 140 150 160
160 170 180 190 200 210
pF1KE2 MCGAKTGKYSLGDCSVRWAYILAIIG-ILNALILSFLAFVLGNRQTDLLQEELKPENKDF
.:: .. :. ::::. ::. :: : .:. . : : . ..: .:::.. :.:..
CCDS40 YCGHYASAYKPGDCSLGWAFYTAIGGTVLTFICAVFSAQAEIATSSDKVQEEIE-EGKNL
170 180 190 200 210 220
220 230 240
pF1KE2 VGSTVSSVLRPGGDVSGWGVLPCPVAHSQGP
.
CCDS40 ICLL
>>CCDS14562.1 LHFPL1 gene_id:340596|Hs108|chrX (220 aa)
initn: 244 init1: 135 opt: 280 Z-score: 355.2 bits: 73.0 E(32554): 1.8e-13
Smith-Waterman score: 280; 25.7% identity (55.8% similar) in 226 aa overlap (16-227:1-220)
10 20 30 40 50
pF1KE2 MLPSQEASKLYHEHYMRNS-RAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYF
::.: .:.:::.... :. . . .. :::. : . :: :
CCDS14 MRSSLTMVGTLWAFLSLVTAVTSSTSYFLPYWLFGS-QMGKPVSF
10 20 30 40
60 70 80 90 100
pF1KE2 GLFHYCV----GSGLAGRELTCRGSFTDFSTIPSSAFK--------AAAFFVLLSMVLIL
. :. : : : . . : ...:..::: :.. . :...:.... .:
CCDS14 STFRRCNYPVRGEGHSLIMVEECGRYASFNAIPSLAWQMCTVVTGAGCALLLLVALAAVL
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE2 GCITCFSLFFFCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYS
:: :. .. . . . . :....: . :: ..: ::.. : . :: .....
CCDS14 GC--CMEELI---SRMMGRCMGAAQFVGGLLISSGCALYPLGWNSPEIMQTCGNVSNQFQ
110 120 130 140 150
170 180 190 200 210 220
pF1KE2 LGDCSVRWAYILAIIGILNA-LILSFLAFVLGNRQTDLLQEELKPENKDFVGSTVSSVLR
:: : . ::: : : : :: ..:. : .. : .: . . .. :.
CCDS14 LGTCRLGWAYYCAGGGAAAAMLICTWLSCFAGRNPKPVILVESIMRNTNSYAMELDHCLK
160 170 180 190 200 210
230 240
pF1KE2 PGGDVSGWGVLPCPVAHSQGP
:
CCDS14 P
220
247 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Jan 20 09:29:43 2017 done: Fri Jan 20 09:29:43 2017
Total Scan time: 1.600 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]