Result of FASTA (omim) for
pF1KE2657
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2657, 197 aa
1>>>pF1KE2657 197 - 197 aa - 197 aa
Library: /omim/omim.rfq.tfa
60892289 residues in 85410 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7688+/-0.000286; mu= 16.5449+/- 0.018
mean_var=62.1549+/-12.607, 0's: 0 Z-trim(118.0): 11 B-trim: 0 in 0/53
Lambda= 0.162681
statistics sampled from 30508 (30519) to 30508 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.357), width: 16
Scan time: 6.320
The best scores are: opt bits E(85410)
NP_003009 (OMIM: 178500,178620,610913) pulmonary s ( 197) 1287 309.8 1.8e-84
NP_001165881 (OMIM: 178500,178620,610913) pulmonar ( 197) 1287 309.8 1.8e-84
NP_001165828 (OMIM: 178500,178620,610913) pulmonar ( 191) 1222 294.6 6.9e-80
NP_001304709 (OMIM: 178500,178620,610913) pulmonar ( 191) 1222 294.6 6.9e-80
NP_001304707 (OMIM: 178500,178620,610913) pulmonar ( 191) 1222 294.6 6.9e-80
NP_001304708 (OMIM: 178500,178620,610913) pulmonar ( 144) 845 206.0 2.4e-53
XP_011542915 (OMIM: 178500,178620,610913) PREDICTE ( 144) 845 206.0 2.4e-53
NP_001011705 (OMIM: 605147) leukocyte cell-derived ( 333) 148 42.7 0.0008
NP_008946 (OMIM: 605147) leukocyte cell-derived ch ( 334) 148 42.7 0.0008
XP_011533200 (OMIM: 605147) PREDICTED: leukocyte c ( 364) 148 42.7 0.00086
XP_011533199 (OMIM: 605147) PREDICTED: leukocyte c ( 365) 148 42.7 0.00086
>>NP_003009 (OMIM: 178500,178620,610913) pulmonary surfa (197 aa)
initn: 1287 init1: 1287 opt: 1287 Z-score: 1637.5 bits: 309.8 E(85410): 1.8e-84
Smith-Waterman score: 1287; 99.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)
10 20 30 40 50 60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_003 CYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
130 140 150 160 170 180
190
pF1KE2 LGMAVNTLCGEVPLYYI
:::::.:::::::::::
NP_003 LGMAVSTLCGEVPLYYI
190
>>NP_001165881 (OMIM: 178500,178620,610913) pulmonary su (197 aa)
initn: 1287 init1: 1287 opt: 1287 Z-score: 1637.5 bits: 309.8 E(85410): 1.8e-84
Smith-Waterman score: 1287; 99.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)
10 20 30 40 50 60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_001 CYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
130 140 150 160 170 180
190
pF1KE2 LGMAVNTLCGEVPLYYI
:::::.:::::::::::
NP_001 LGMAVSTLCGEVPLYYI
190
>>NP_001165828 (OMIM: 178500,178620,610913) pulmonary su (191 aa)
initn: 939 init1: 939 opt: 1222 Z-score: 1555.3 bits: 294.6 E(85410): 6.9e-80
Smith-Waterman score: 1222; 95.9% identity (97.0% similar) in 197 aa overlap (1-197:1-191)
10 20 30 40 50 60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
:::::::::::::::::.::::::: :::::::::::::::::::::::::::::
NP_001 CYIMKIAPESIPSLEALTRKVHNFQ------AKPAVPTSKLGQAEGRDAGSAPSGGDPAF
130 140 150 160 170
190
pF1KE2 LGMAVNTLCGEVPLYYI
:::::.:::::::::::
NP_001 LGMAVSTLCGEVPLYYI
180 190
>>NP_001304709 (OMIM: 178500,178620,610913) pulmonary su (191 aa)
initn: 939 init1: 939 opt: 1222 Z-score: 1555.3 bits: 294.6 E(85410): 6.9e-80
Smith-Waterman score: 1222; 95.9% identity (97.0% similar) in 197 aa overlap (1-197:1-191)
10 20 30 40 50 60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
:::::::::::::::::.::::::: :::::::::::::::::::::::::::::
NP_001 CYIMKIAPESIPSLEALTRKVHNFQ------AKPAVPTSKLGQAEGRDAGSAPSGGDPAF
130 140 150 160 170
190
pF1KE2 LGMAVNTLCGEVPLYYI
:::::.:::::::::::
NP_001 LGMAVSTLCGEVPLYYI
180 190
>>NP_001304707 (OMIM: 178500,178620,610913) pulmonary su (191 aa)
initn: 939 init1: 939 opt: 1222 Z-score: 1555.3 bits: 294.6 E(85410): 6.9e-80
Smith-Waterman score: 1222; 95.9% identity (97.0% similar) in 197 aa overlap (1-197:1-191)
10 20 30 40 50 60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
:::::::::::::::::.::::::: :::::::::::::::::::::::::::::
NP_001 CYIMKIAPESIPSLEALTRKVHNFQ------AKPAVPTSKLGQAEGRDAGSAPSGGDPAF
130 140 150 160 170
190
pF1KE2 LGMAVNTLCGEVPLYYI
:::::.:::::::::::
NP_001 LGMAVSTLCGEVPLYYI
180 190
>>NP_001304708 (OMIM: 178500,178620,610913) pulmonary su (144 aa)
initn: 924 init1: 845 opt: 845 Z-score: 1078.8 bits: 206.0 E(85410): 2.4e-53
Smith-Waterman score: 845; 98.5% identity (100.0% similar) in 130 aa overlap (68-197:15-144)
40 50 60 70 80 90
pF1KE2 IVVVVVVLIVVVIVGALLMGLHMSQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIG
::::::::::::::::::::::::::::::
NP_001 MDVGSKEVLMESPPVLEMSIGAPEAQQRLALSEHLVTTATFSIG
10 20 30 40
100 110 120 130 140 150
pF1KE2 STGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVP
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
NP_001 STGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVP
50 60 70 80 90 100
160 170 180 190
pF1KE2 TSKLGQAEGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI
::::::::::::::::::::::::::::.:::::::::::
NP_001 TSKLGQAEGRDAGSAPSGGDPAFLGMAVSTLCGEVPLYYI
110 120 130 140
>>XP_011542915 (OMIM: 178500,178620,610913) PREDICTED: p (144 aa)
initn: 924 init1: 845 opt: 845 Z-score: 1078.8 bits: 206.0 E(85410): 2.4e-53
Smith-Waterman score: 845; 98.5% identity (100.0% similar) in 130 aa overlap (68-197:15-144)
40 50 60 70 80 90
pF1KE2 IVVVVVVLIVVVIVGALLMGLHMSQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIG
::::::::::::::::::::::::::::::
XP_011 MDVGSKEVLMESPPVLEMSIGAPEAQQRLALSEHLVTTATFSIG
10 20 30 40
100 110 120 130 140 150
pF1KE2 STGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVP
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
XP_011 STGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVP
50 60 70 80 90 100
160 170 180 190
pF1KE2 TSKLGQAEGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI
::::::::::::::::::::::::::::.:::::::::::
XP_011 TSKLGQAEGRDAGSAPSGGDPAFLGMAVSTLCGEVPLYYI
110 120 130 140
>>NP_001011705 (OMIM: 605147) leukocyte cell-derived che (333 aa)
initn: 115 init1: 59 opt: 148 Z-score: 189.6 bits: 42.7 E(85410): 0.0008
Smith-Waterman score: 148; 24.9% identity (55.2% similar) in 201 aa overlap (3-197:13-201)
10 20 30 40
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVV--VVLIVV
:: .: . ::: :.. : :..: .. ::.. .::..
NP_001 MTENSDKVPIALVGPDDVEFCSPPAYATLTVK----PSSPARLLKVGAVVLISGAVLLLF
10 20 30 40 50
50 60 70 80 90 100
pF1KE2 VIVGALLMGLHMSQKHTEMV-LEMSIGAPEAQQRLALSEHLVTTATFSIGS---TGLVVY
.::. . . :..: : :::.. . . .. . ::..:: ...:
NP_001 GAIGAFYF-WKGSDSHIYNVHYTMSINGKLQDGSMEIDAG-NNLETFKMGSGAEEAIAVN
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE2 DYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQA
:.:. . . . : : ::: . :: . :.... .. .:..: .:.. ..
NP_001 DFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVTKQ----SISSKLEGK-IMPVKYEENS
120 130 140 150 160
170 180 190
pF1KE2 EGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI
: . : : .::. : :::..:....
NP_001 LIWVAVDQPVK-DNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTKRP
170 180 190 200 210 220
NP_001 HSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNPYHQEGESMTFDPRLDHEGICCIECRRS
230 240 250 260 270 280
>>NP_008946 (OMIM: 605147) leukocyte cell-derived chemot (334 aa)
initn: 115 init1: 59 opt: 148 Z-score: 189.6 bits: 42.7 E(85410): 0.0008
Smith-Waterman score: 148; 24.9% identity (55.2% similar) in 201 aa overlap (3-197:13-201)
10 20 30 40
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVV--VVLIVV
:: .: . ::: :.. : :..: .. ::.. .::..
NP_008 MTENSDKVPIALVGPDDVEFCSPPAYATLTVK----PSSPARLLKVGAVVLISGAVLLLF
10 20 30 40 50
50 60 70 80 90 100
pF1KE2 VIVGALLMGLHMSQKHTEMV-LEMSIGAPEAQQRLALSEHLVTTATFSIGS---TGLVVY
.::. . . :..: : :::.. . . .. . ::..:: ...:
NP_008 GAIGAFYF-WKGSDSHIYNVHYTMSINGKLQDGSMEIDAG-NNLETFKMGSGAEEAIAVN
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE2 DYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQA
:.:. . . . : : ::: . :: . :.... .. .:..: .:.. ..
NP_008 DFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVTKQ----SISSKLEGK-IMPVKYEENS
120 130 140 150 160
170 180 190
pF1KE2 EGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI
: . : : .::. : :::..:....
NP_008 LIWVAVDQPVK-DNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTKRP
170 180 190 200 210 220
NP_008 HSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNPYHQQEGESMTFDPRLDHEGICCIECRR
230 240 250 260 270 280
>>XP_011533200 (OMIM: 605147) PREDICTED: leukocyte cell- (364 aa)
initn: 115 init1: 59 opt: 148 Z-score: 189.1 bits: 42.7 E(85410): 0.00086
Smith-Waterman score: 148; 24.9% identity (55.2% similar) in 201 aa overlap (3-197:40-228)
10 20 30
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVH
:: .: . ::: :.. : :..
XP_011 RSQGAQGVSKCLTPPAANMTENSDKVPIALVGPDDVEFCSPPAYATLTVK----PSSPAR
10 20 30 40 50 60
40 50 60 70 80
pF1KE2 LKRLLIVVVV--VVLIVVVIVGALLMGLHMSQKHTEMV-LEMSIGAPEAQQRLALSEHLV
: .. ::.. .::.. .::. . . :..: : :::.. . . ..
XP_011 LLKVGAVVLISGAVLLLFGAIGAFYF-WKGSDSHIYNVHYTMSINGKLQDGSMEIDAG-N
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE2 TTATFSIGS---TGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQM
. ::..:: ...: :.:. . . . : : ::: . :: . :.... ..
XP_011 NLETFKMGSGAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVTKQ----SI
130 140 150 160 170
150 160 170 180 190
pF1KE2 ECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI
.:..: .:.. .. : . : : .::. : :::..:....
XP_011 SSKLEGK-IMPVKYEENSLIWVAVDQPVK-DNSFLSSKVLELCGDLPIFWLKPTYPKEIF
180 190 200 210 220 230
XP_011 AEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNPYHQEG
240 250 260 270 280 290
197 residues in 1 query sequences
60892289 residues in 85410 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Dec 21 11:14:00 2016 done: Wed Dec 21 11:14:01 2016
Total Scan time: 6.320 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]