FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2657, 197 aa
  1>>>pF1KE2657     197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0281+/-0.000608; mu= 15.0592+/- 0.037
 mean_var=62.0757+/-12.565, 0's: 0 Z-trim(111.2): 9  B-trim: 0 in 0/49
 Lambda= 0.162785
 statistics sampled from 12189 (12196) to 12189 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.375), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS43722.1 SFTPC gene_id:6440|Hs108|chr8          ( 197) 1287 310.0 6.2e-85
CCDS55209.1 SFTPC gene_id:6440|Hs108|chr8          ( 191) 1222 294.7 2.4e-80
CCDS83259.1 SFTPC gene_id:6440|Hs108|chr8          ( 144)  845 206.1 8.5e-54


>>CCDS43722.1 SFTPC gene_id:6440|Hs108|chr8               (197 aa)
 initn: 1287 init1: 1287 opt: 1287  Z-score: 1638.3  bits: 310.0 E(32554): 6.2e-85
Smith-Waterman score: 1287; 99.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS43 CYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
              130       140       150       160       170       180

              190       
pF1KE2 LGMAVNTLCGEVPLYYI
       :::::.:::::::::::
CCDS43 LGMAVSTLCGEVPLYYI
              190       

>>CCDS55209.1 SFTPC gene_id:6440|Hs108|chr8               (191 aa)
 initn: 939 init1: 939 opt: 1222  Z-score: 1556.0  bits: 294.7 E(32554): 2.4e-80
Smith-Waterman score: 1222; 95.9% identity (97.0% similar) in 197 aa overlap (1-197:1-191)

               10        20        30        40        50        60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
       :::::::::::::::::.:::::::      :::::::::::::::::::::::::::::
CCDS55 CYIMKIAPESIPSLEALTRKVHNFQ------AKPAVPTSKLGQAEGRDAGSAPSGGDPAF
              130       140             150       160       170    

              190       
pF1KE2 LGMAVNTLCGEVPLYYI
       :::::.:::::::::::
CCDS55 LGMAVSTLCGEVPLYYI
          180       190 

>>CCDS83259.1 SFTPC gene_id:6440|Hs108|chr8               (144 aa)
 initn: 924 init1: 845 opt: 845  Z-score: 1079.3  bits: 206.1 E(32554): 8.5e-54
Smith-Waterman score: 845; 98.5% identity (100.0% similar) in 130 aa overlap (68-197:15-144)

        40        50        60        70        80        90       
pF1KE2 IVVVVVVLIVVVIVGALLMGLHMSQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIG
                                     ::::::::::::::::::::::::::::::
CCDS83                 MDVGSKEVLMESPPVLEMSIGAPEAQQRLALSEHLVTTATFSIG
                               10        20        30        40    

       100       110       120       130       140       150       
pF1KE2 STGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVP
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS83 STGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVP
           50        60        70        80        90       100    

       160       170       180       190       
pF1KE2 TSKLGQAEGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI
       ::::::::::::::::::::::::::::.:::::::::::
CCDS83 TSKLGQAEGRDAGSAPSGGDPAFLGMAVSTLCGEVPLYYI
          110       120       130       140    




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Dec 21 11:13:59 2016 done: Wed Dec 21 11:13:59 2016
 Total Scan time:  2.150 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]