FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2656, 264 aa
  1>>>pF1KE2656     264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
  60892289 residues in 85410 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3262+/-0.00036; mu= 14.2993+/- 0.022
 mean_var=61.6625+/-12.284, 0's: 0 Z-trim(112.7): 10  B-trim: 0 in 0/59
 Lambda= 0.163329
 statistics sampled from 21784 (21786) to 21784 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.255), width:  16
 Scan time:  6.230

The best scores are:                                      opt bits E(85410)
NP_064617 (OMIM: 609702) proteasome assembly chape ( 264) 1756 422.3 4.5e-118
NP_671692 (OMIM: 609702) proteasome assembly chape ( 233) 1548 373.3 2.3e-103


>>NP_064617 (OMIM: 609702) proteasome assembly chaperone  (264 aa)
 initn: 1756 init1: 1756 opt: 1756  Z-score: 2240.8  bits: 422.3 E(85410): 4.5e-118
Smith-Waterman score: 1756; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KE2 MFVPCGESAPDLAGFTLLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 MFVPCGESAPDLAGFTLLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 YATTEGNSTELSINAEVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 YATTEGNSTELSINAEVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 LSSSHSYQRNDLQLRSTPFRYLLTPSMQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 LSSSHSYQRNDLQLRSTPFRYLLTPSMQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 IPGGGITKTLYDESCSKEIQMAVLLKFVSEGDNIPDALGLVEYLNEWLQILKPLSDDPTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 IPGGGITKTLYDESCSKEIQMAVLLKFVSEGDNIPDALGLVEYLNEWLQILKPLSDDPTV
              190       200       210       220       230       240

              250       260    
pF1KE2 SASRWKIPSSWRLLFGSGLPPALF
       ::::::::::::::::::::::::
NP_064 SASRWKIPSSWRLLFGSGLPPALF
              250       260    

>>NP_671692 (OMIM: 609702) proteasome assembly chaperone  (233 aa)
 initn: 1548 init1: 1548 opt: 1548  Z-score: 1976.8  bits: 373.3 E(85410): 2.3e-103
Smith-Waterman score: 1548; 100.0% identity (100.0% similar) in 233 aa overlap (32-264:1-233)

              10        20        30        40        50        60 
pF1KE2 FVPCGESAPDLAGFTLLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPY
                                     ::::::::::::::::::::::::::::::
NP_671                               MDLIISTLNMSKIGYFYTDCLVPMVGNNPY
                                             10        20        30

              70        80        90       100       110       120 
pF1KE2 ATTEGNSTELSINAEVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 ATTEGNSTELSINAEVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVL
               40        50        60        70        80        90

             130       140       150       160       170       180 
pF1KE2 SSSHSYQRNDLQLRSTPFRYLLTPSMQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 SSSHSYQRNDLQLRSTPFRYLLTPSMQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIRI
              100       110       120       130       140       150

             190       200       210       220       230       240 
pF1KE2 PGGGITKTLYDESCSKEIQMAVLLKFVSEGDNIPDALGLVEYLNEWLQILKPLSDDPTVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 PGGGITKTLYDESCSKEIQMAVLLKFVSEGDNIPDALGLVEYLNEWLQILKPLSDDPTVS
              160       170       180       190       200       210

             250       260    
pF1KE2 ASRWKIPSSWRLLFGSGLPPALF
       :::::::::::::::::::::::
NP_671 ASRWKIPSSWRLLFGSGLPPALF
              220       230   




264 residues in 1 query   sequences
60892289 residues in 85410 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Dec  1 15:09:21 2016 done: Thu Dec  1 15:09:21 2016
 Total Scan time:  6.230 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]