Result of FASTA (omim) for
pF1KE2654
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2654, 279 aa
1>>>pF1KE2654 279 - 279 aa - 279 aa
Library: /omim/omim.rfq.tfa
60892289 residues in 85410 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6170+/-0.000408; mu= 18.4848+/- 0.025
mean_var=59.8911+/-12.267, 0's: 0 Z-trim(110.9): 43 B-trim: 0 in 0/53
Lambda= 0.165727
statistics sampled from 19313 (19356) to 19313 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.227), width: 16
Scan time: 5.940
The best scores are: opt bits E(85410)
NP_073732 (OMIM: 611813) elongation of very long c ( 279) 1930 470.0 2.1e-132
NP_001243328 (OMIM: 611813) elongation of very lon ( 279) 1930 470.0 2.1e-132
NP_001243331 (OMIM: 611813) elongation of very lon ( 198) 1407 344.9 7.2e-95
NP_001243330 (OMIM: 611813) elongation of very lon ( 252) 1235 303.8 2.1e-82
XP_011541953 (OMIM: 614451) PREDICTED: elongation ( 281) 1194 294.1 2e-79
XP_005248663 (OMIM: 614451) PREDICTED: elongation ( 281) 1194 294.1 2e-79
XP_016865374 (OMIM: 614451) PREDICTED: elongation ( 281) 1194 294.1 2e-79
XP_006714758 (OMIM: 614451) PREDICTED: elongation ( 281) 1194 294.1 2e-79
NP_079206 (OMIM: 614451) elongation of very long c ( 281) 1194 294.1 2e-79
NP_001098028 (OMIM: 614451) elongation of very lon ( 281) 1194 294.1 2e-79
XP_016865375 (OMIM: 614451) PREDICTED: elongation ( 268) 1158 285.4 7.6e-77
XP_016865376 (OMIM: 614451) PREDICTED: elongation ( 268) 1158 285.4 7.6e-77
XP_005248664 (OMIM: 614451) PREDICTED: elongation ( 268) 1158 285.4 7.6e-77
NP_001284546 (OMIM: 614451) elongation of very lon ( 268) 1158 285.4 7.6e-77
NP_001284547 (OMIM: 614451) elongation of very lon ( 194) 916 227.5 1.5e-59
NP_073563 (OMIM: 605512) elongation of very long c ( 314) 752 188.4 1.4e-47
NP_001288785 (OMIM: 611805,615957) elongation of v ( 299) 633 160.0 5e-39
NP_068586 (OMIM: 611805,615957) elongation of very ( 299) 633 160.0 5e-39
NP_060240 (OMIM: 611814) elongation of very long c ( 296) 599 151.8 1.4e-36
XP_011513019 (OMIM: 611814) PREDICTED: elongation ( 297) 599 151.8 1.4e-36
XP_011513018 (OMIM: 611814) PREDICTED: elongation ( 326) 599 151.9 1.5e-36
NP_001229757 (OMIM: 611805,615957) elongation of v ( 326) 479 123.2 6.5e-28
NP_001229759 (OMIM: 611805,615957) elongation of v ( 262) 386 100.9 2.7e-21
NP_689523 (OMIM: 611815) elongation of very long c ( 270) 296 79.3 8.4e-15
XP_011538547 (OMIM: 611815) PREDICTED: elongation ( 270) 296 79.3 8.4e-15
XP_011530536 (OMIM: 611546) PREDICTED: elongation ( 265) 269 72.9 7.2e-13
XP_011530535 (OMIM: 611546) PREDICTED: elongation ( 265) 269 72.9 7.2e-13
NP_001124193 (OMIM: 611546) elongation of very lon ( 265) 269 72.9 7.2e-13
NP_076995 (OMIM: 611546) elongation of very long c ( 265) 269 72.9 7.2e-13
XP_011530537 (OMIM: 611546) PREDICTED: elongation ( 181) 226 62.5 6.7e-10
XP_016866474 (OMIM: 611814) PREDICTED: elongation ( 150) 170 49.0 6.3e-06
>>NP_073732 (OMIM: 611813) elongation of very long chain (279 aa)
initn: 1930 init1: 1930 opt: 1930 Z-score: 2498.0 bits: 470.0 E(85410): 2.1e-132
Smith-Waterman score: 1930; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KE2 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 FMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 YYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYG
190 200 210 220 230 240
250 260 270
pF1KE2 TIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
:::::::::::::::::::::::::::::::::::::::
NP_073 TIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
250 260 270
>>NP_001243328 (OMIM: 611813) elongation of very long ch (279 aa)
initn: 1930 init1: 1930 opt: 1930 Z-score: 2498.0 bits: 470.0 E(85410): 2.1e-132
Smith-Waterman score: 1930; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KE2 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYG
190 200 210 220 230 240
250 260 270
pF1KE2 TIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
:::::::::::::::::::::::::::::::::::::::
NP_001 TIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
250 260 270
>>NP_001243331 (OMIM: 611813) elongation of very long ch (198 aa)
initn: 1407 init1: 1407 opt: 1407 Z-score: 1824.2 bits: 344.9 E(85410): 7.2e-95
Smith-Waterman score: 1407; 100.0% identity (100.0% similar) in 198 aa overlap (82-279:1-198)
60 70 80 90 100 110
pF1KE2 NRKPFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVA
::::::::::::::::::::::::::::::
NP_001 MSGWLSTYTWRCDPVDYSNSPEALRMVRVA
10 20 30
120 130 140 150 160 170
pF1KE2 WLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMIN
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE2 SSVHVIMYLYYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVHVIMYLYYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPV
100 110 120 130 140 150
240 250 260 270
pF1KE2 IIHLIWMYGTIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIHLIWMYGTIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
160 170 180 190
>>NP_001243330 (OMIM: 611813) elongation of very long ch (252 aa)
initn: 1220 init1: 1220 opt: 1235 Z-score: 1600.5 bits: 303.8 E(85410): 2.1e-82
Smith-Waterman score: 1666; 90.3% identity (90.3% similar) in 279 aa overlap (1-279:1-252)
10 20 30 40 50 60
pF1KE2 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFI
::::::::::::::::::: ::::::::::::::
NP_001 FMIVYNFSLVALSLYIVYE---------------------------MVRVAWLFLFSKFI
70 80 90
130 140 150 160 170 180
pF1KE2 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE2 YYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYG
160 170 180 190 200 210
250 260 270
pF1KE2 TIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
:::::::::::::::::::::::::::::::::::::::
NP_001 TIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
220 230 240 250
>>XP_011541953 (OMIM: 614451) PREDICTED: elongation of v (281 aa)
initn: 1231 init1: 1185 opt: 1194 Z-score: 1546.9 bits: 294.1 E(85410): 2e-79
Smith-Waterman score: 1194; 59.2% identity (86.8% similar) in 265 aa overlap (5-269:11-274)
10 20 30 40 50
pF1KE2 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRK
:.::.. .: ::::.. . ::.::: .: .: ::::: ::::..: :::
XP_011 MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 PFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLF
::.:. ::.::: .: .:.:. :::.:::: :..::: :::: :: ::::.:. ::.
XP_011 PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 LFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSV
:::::::.::..:.::::..::::::::::...::.::.:::.: ::.:.:::..:..:
XP_011 YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 HVIMYLYYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIH
::.:: ::::::.::. : ::::::..:..::.:::.:..::::..:: .:.::.::.
XP_011 HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC
190 200 210 220 230 240
240 250 260 270
pF1KE2 LIWMYGTIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
.: :. .:..:: .:::..::::.:::.... ::
XP_011 IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVK-NGTCKNKDN
250 260 270 280
>>XP_005248663 (OMIM: 614451) PREDICTED: elongation of v (281 aa)
initn: 1231 init1: 1185 opt: 1194 Z-score: 1546.9 bits: 294.1 E(85410): 2e-79
Smith-Waterman score: 1194; 59.2% identity (86.8% similar) in 265 aa overlap (5-269:11-274)
10 20 30 40 50
pF1KE2 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRK
:.::.. .: ::::.. . ::.::: .: .: ::::: ::::..: :::
XP_005 MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 PFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLF
::.:. ::.::: .: .:.:. :::.:::: :..::: :::: :: ::::.:. ::.
XP_005 PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 LFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSV
:::::::.::..:.::::..::::::::::...::.::.:::.: ::.:.:::..:..:
XP_005 YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 HVIMYLYYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIH
::.:: ::::::.::. : ::::::..:..::.:::.:..::::..:: .:.::.::.
XP_005 HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC
190 200 210 220 230 240
240 250 260 270
pF1KE2 LIWMYGTIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
.: :. .:..:: .:::..::::.:::.... ::
XP_005 IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVK-NGTCKNKDN
250 260 270 280
>>XP_016865374 (OMIM: 614451) PREDICTED: elongation of v (281 aa)
initn: 1231 init1: 1185 opt: 1194 Z-score: 1546.9 bits: 294.1 E(85410): 2e-79
Smith-Waterman score: 1194; 59.2% identity (86.8% similar) in 265 aa overlap (5-269:11-274)
10 20 30 40 50
pF1KE2 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRK
:.::.. .: ::::.. . ::.::: .: .: ::::: ::::..: :::
XP_016 MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 PFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLF
::.:. ::.::: .: .:.:. :::.:::: :..::: :::: :: ::::.:. ::.
XP_016 PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 LFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSV
:::::::.::..:.::::..::::::::::...::.::.:::.: ::.:.:::..:..:
XP_016 YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 HVIMYLYYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIH
::.:: ::::::.::. : ::::::..:..::.:::.:..::::..:: .:.::.::.
XP_016 HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC
190 200 210 220 230 240
240 250 260 270
pF1KE2 LIWMYGTIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
.: :. .:..:: .:::..::::.:::.... ::
XP_016 IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVK-NGTCKNKDN
250 260 270 280
>>XP_006714758 (OMIM: 614451) PREDICTED: elongation of v (281 aa)
initn: 1231 init1: 1185 opt: 1194 Z-score: 1546.9 bits: 294.1 E(85410): 2e-79
Smith-Waterman score: 1194; 59.2% identity (86.8% similar) in 265 aa overlap (5-269:11-274)
10 20 30 40 50
pF1KE2 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRK
:.::.. .: ::::.. . ::.::: .: .: ::::: ::::..: :::
XP_006 MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 PFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLF
::.:. ::.::: .: .:.:. :::.:::: :..::: :::: :: ::::.:. ::.
XP_006 PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 LFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSV
:::::::.::..:.::::..::::::::::...::.::.:::.: ::.:.:::..:..:
XP_006 YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 HVIMYLYYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIH
::.:: ::::::.::. : ::::::..:..::.:::.:..::::..:: .:.::.::.
XP_006 HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC
190 200 210 220 230 240
240 250 260 270
pF1KE2 LIWMYGTIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
.: :. .:..:: .:::..::::.:::.... ::
XP_006 IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVK-NGTCKNKDN
250 260 270 280
>>NP_079206 (OMIM: 614451) elongation of very long chain (281 aa)
initn: 1231 init1: 1185 opt: 1194 Z-score: 1546.9 bits: 294.1 E(85410): 2e-79
Smith-Waterman score: 1194; 59.2% identity (86.8% similar) in 265 aa overlap (5-269:11-274)
10 20 30 40 50
pF1KE2 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRK
:.::.. .: ::::.. . ::.::: .: .: ::::: ::::..: :::
NP_079 MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 PFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLF
::.:. ::.::: .: .:.:. :::.:::: :..::: :::: :: ::::.:. ::.
NP_079 PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 LFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSV
:::::::.::..:.::::..::::::::::...::.::.:::.: ::.:.:::..:..:
NP_079 YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 HVIMYLYYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIH
::.:: ::::::.::. : ::::::..:..::.:::.:..::::..:: .:.::.::.
NP_079 HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC
190 200 210 220 230 240
240 250 260 270
pF1KE2 LIWMYGTIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
.: :. .:..:: .:::..::::.:::.... ::
NP_079 IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVK-NGTCKNKDN
250 260 270 280
>>NP_001098028 (OMIM: 614451) elongation of very long ch (281 aa)
initn: 1231 init1: 1185 opt: 1194 Z-score: 1546.9 bits: 294.1 E(85410): 2e-79
Smith-Waterman score: 1194; 59.2% identity (86.8% similar) in 265 aa overlap (5-269:11-274)
10 20 30 40 50
pF1KE2 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRK
:.::.. .: ::::.. . ::.::: .: .: ::::: ::::..: :::
NP_001 MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 PFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLF
::.:. ::.::: .: .:.:. :::.:::: :..::: :::: :: ::::.:. ::.
NP_001 PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 LFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSV
:::::::.::..:.::::..::::::::::...::.::.:::.: ::.:.:::..:..:
NP_001 YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 HVIMYLYYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIH
::.:: ::::::.::. : ::::::..:..::.:::.:..::::..:: .:.::.::.
NP_001 HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC
190 200 210 220 230 240
240 250 260 270
pF1KE2 LIWMYGTIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN
.: :. .:..:: .:::..::::.:::.... ::
NP_001 IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVK-NGTCKNKDN
250 260 270 280
279 residues in 1 query sequences
60892289 residues in 85410 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Dec 1 15:09:57 2016 done: Thu Dec 1 15:09:58 2016
Total Scan time: 5.940 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]