FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2638, 264 aa
  1>>>pF1KE2638 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3801+/-0.000859; mu= 14.0549+/- 0.052
 mean_var=55.9062+/-11.505, 0's: 0 Z-trim(104.6): 18  B-trim: 60 in 1/52
 Lambda= 0.171532
 statistics sampled from 7968 (7982) to 7968 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.245), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS13906.1 BPIFC gene_id:254240|Hs108|chr22       ( 507)  901 231.1 1.2e-60
CCDS13303.1 BPI gene_id:671|Hs108|chr20            ( 487)  273 75.7 6.9e-14


>>CCDS13906.1 BPIFC gene_id:254240|Hs108|chr22            (507 aa)
 initn: 1709 init1: 901 opt: 901  Z-score: 1202.4  bits: 231.1 E(32554): 1.2e-60
Smith-Waterman score: 1385; 80.7% identity (80.7% similar) in 296 aa overlap (1-239:187-482)

                                             10        20        30
pF1KE2                               MEKPILKNLNEMLCPIIASEVKALNANLST
                                     ::::::::::::::::::::::::::::::
CCDS13 KLQDCYAQLSHAHVSFSGELSVLYNSFAEPMEKPILKNLNEMLCPIIASEVKALNANLST
        160       170       180       190       200       210      

               40        50        60        70        80        90
pF1KE2 LEVLTKIDNYTLLDYSLISSPEITENYLDLNLKGVFYPLENLTDPPFSPVPFVLPERSNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LEVLTKIDNYTLLDYSLISSPEITENYLDLNLKGVFYPLENLTDPPFSPVPFVLPERSNS
        220       230       240       250       260       270      

              100       110       120       130       140          
pF1KE2 MLYIGIAEYFFKSASFAHFTAGVFNVTLSTEEISNHFVQNSQGLGNVLSR----------
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS13 MLYIGIAEYFFKSASFAHFTAGVFNVTLSTEEISNHFVQNSQGLGNVLSRIAEIYILSQP
        280       290       300       310       320       330      

                                                             150   
pF1KE2 -----------------------------------------------VASTSVGLVILGQ
                                                      :::::::::::::
CCDS13 FMVRIMATEPPIINLQPGNFTLDIPASIMMLTQPKNSTVETIVSMDFVASTSVGLVILGQ
        340       350       360       370       380       390      

           160       170       180       190       200       210   
pF1KE2 RLVCSLSLNRFRLALPESNRSNIEVLRFENILSSILHFGVLPLANAKLQQGFPLSNPHKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RLVCSLSLNRFRLALPESNRSNIEVLRFENILSSILHFGVLPLANAKLQQGFPLSNPHKF
        400       410       420       430       440       450      

           220       230       240       250       260    
pF1KE2 LFVNSDIEVLEGFLLISTDLKYETSSKQQPSFHVWEGLNLISRQWRGKSAP
       ::::::::::::::::::::::::::                         
CCDS13 LFVNSDIEVLEGFLLISTDLKYETSSKQQPSFHVWEGLNLISRQWRGKSAP
        460       470       480       490       500       

>>CCDS13303.1 BPI gene_id:671|Hs108|chr20                 (487 aa)
 initn: 391 init1: 236 opt: 273  Z-score: 362.8  bits: 75.7 E(32554): 6.9e-14
Smith-Waterman score: 330; 26.8% identity (57.6% similar) in 295 aa overlap (1-236:193-487)

                                             10        20          
pF1KE2                               MEKPILKNLNEMLCPIIASEVKA-LNANLS
                                     .:. . ...: ..:  ... :.. :.  ..
CCDS13 CSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQ
            170       180       190       200       210       220  

      30        40        50        60        70        80         
pF1KE2 TLEVLTKIDNYTLLDYSLISSPEITENYLDLNLKGVFYPLENLTDPPFSPVPFVLPERSN
       :: :.::::. . ..:.:.. :  : . ::...:: ::  .. . :::.:  . .:   .
CCDS13 TLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNPPPFAPPVMEFPAAHD
            230       240       250       260       270       280  

      90       100       110       120         130       140       
pF1KE2 SMLYIGIAEYFFKSASFAHFTAGVFNVTLSTEEIS--NHFVQNSQGLGNVLSRVA-----
        :.:.:...:::..:....  :::...::  . :   ..:  ... .:. : .::     
CCDS13 RMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPN
            290       300       310       320       330       340  

                                                  150              
pF1KE2 --------------------------------------STSVGLVILGQ-----------
                                             :. ..: ..:.           
CCDS13 MKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSSLASLFLIGMHTTGSMEVSAE
            350       360       370       380       390       400  

             160       170       180       190       200       210 
pF1KE2 --RLVCSLSLNRFRLALPESNRSNIEVLRFENILSSILHFGVLPLANAKLQQGFPLSNPH
         :::  :.:.:. : : .:: . . :  ...:.. :. . ::: .: :::.:::: .: 
CCDS13 SNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPA
            410       420       430       440       450       460  

             220       230       240       250       260    
pF1KE2 KFLFVNSDIEVLEGFLLISTDLKYETSSKQQPSFHVWEGLNLISRQWRGKSAP
       .  . :  ..  ..:::...:. :.                            
CCDS13 RVQLYNVVLQPHQNFLLFGADVVYK                            
            470       480                                   




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:22:44 2016 done: Sun Nov  6 14:22:44 2016
 Total Scan time:  2.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]