FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2626, 302 aa
  1>>>pF1KE2626     302 - 302 aa - 302 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5037+/-0.00086; mu= 10.2521+/- 0.051
 mean_var=98.6513+/-19.615, 0's: 0 Z-trim(108.9): 21  B-trim: 11 in 1/51
 Lambda= 0.129129
 statistics sampled from 10646 (10660) to 10646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.319), width:  16
 Scan time:  1.350

The best scores are:                                      opt bits E(33420)
CCDS6745.1 STX17 gene_id:55014|Hs109|chr9          ( 302) 1924 368.6 3.4e-102


>>CCDS6745.1 STX17 gene_id:55014|Hs109|chr9               (302 aa)
 initn: 1924 init1: 1924 opt: 1924  Z-score: 1948.3  bits: 368.6 E(33420): 3.4e-102
Smith-Waterman score: 1924; 100.0% identity (100.0% similar) in 302 aa overlap (1-302:1-302)

               10        20        30        40        50        60
pF1KE2 MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 TVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 NDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 NDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADLI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 ELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 GMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK
              250       260       270       280       290       300

         
pF1KE2 CS
       ::
CCDS67 CS
         




302 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:43:27 2019 done: Thu Oct 24 21:43:27 2019
 Total Scan time:  1.350 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]