Result of FASTA (omim) for
pF1KE2604
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2604, 179 aa
1>>>pF1KE2604 179 - 179 aa - 179 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0262+/-0.00029; mu= 10.6423+/- 0.018
mean_var=89.3355+/-17.833, 0's: 0 Z-trim(120.0): 9 B-trim: 474 in 1/51
Lambda= 0.135694
statistics sampled from 34654 (34663) to 34654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.406), width: 16
Scan time: 4.230
The best scores are: opt bits E(85289)
NP_001305692 (OMIM: 615556) alpha-tubulin N-acetyl ( 323) 1154 235.0 9.1e-62
NP_079185 (OMIM: 615556) alpha-tubulin N-acetyltra ( 333) 1154 235.0 9.4e-62
NP_001026892 (OMIM: 615556) alpha-tubulin N-acetyl ( 409) 1154 235.0 1.1e-61
XP_005249472 (OMIM: 615556) PREDICTED: alpha-tubul ( 465) 1154 235.1 1.2e-61
NP_001177653 (OMIM: 615556) alpha-tubulin N-acetyl ( 288) 851 175.6 6e-44
NP_001305691 (OMIM: 615556) alpha-tubulin N-acetyl ( 300) 851 175.6 6.2e-44
NP_001241881 (OMIM: 615556) alpha-tubulin N-acetyl ( 310) 851 175.6 6.4e-44
XP_016866805 (OMIM: 615556) PREDICTED: alpha-tubul ( 442) 851 175.7 8.5e-44
XP_011513220 (OMIM: 615556) PREDICTED: alpha-tubul ( 266) 161 40.5 0.0026
>>NP_001305692 (OMIM: 615556) alpha-tubulin N-acetyltran (323 aa)
initn: 1172 init1: 1154 opt: 1154 Z-score: 1229.9 bits: 235.0 E(85289): 9.1e-62
Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:70-242)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
NP_001 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
160 170 180 190 200 210
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
::::::::::::::::::::::.
NP_001 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
220 230 240 250 260 270
>>NP_079185 (OMIM: 615556) alpha-tubulin N-acetyltransfe (333 aa)
initn: 1172 init1: 1154 opt: 1154 Z-score: 1229.7 bits: 235.0 E(85289): 9.4e-62
Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:70-242)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
NP_079 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
160 170 180 190 200 210
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
::::::::::::::::::::::.
NP_079 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
220 230 240 250 260 270
>>NP_001026892 (OMIM: 615556) alpha-tubulin N-acetyltran (409 aa)
initn: 1154 init1: 1154 opt: 1154 Z-score: 1228.4 bits: 235.0 E(85289): 1.1e-61
Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:58-230)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
NP_001 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
150 160 170 180 190 200
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
::::::::::::::::::::::.
NP_001 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
210 220 230 240 250 260
>>XP_005249472 (OMIM: 615556) PREDICTED: alpha-tubulin N (465 aa)
initn: 1154 init1: 1154 opt: 1154 Z-score: 1227.5 bits: 235.1 E(85289): 1.2e-61
Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:58-230)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
XP_005 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
150 160 170 180 190 200
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
::::::::::::::::::::::.
XP_005 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
210 220 230 240 250 260
>>NP_001177653 (OMIM: 615556) alpha-tubulin N-acetyltran (288 aa)
initn: 986 init1: 841 opt: 851 Z-score: 910.0 bits: 175.6 E(85289): 6e-44
Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:58-207)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
NP_001 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::: :::
NP_001 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA---------------------
150 160 170 180
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
:::::::::::::::::::::.
NP_001 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
190 200 210 220 230 240
>>NP_001305691 (OMIM: 615556) alpha-tubulin N-acetyltran (300 aa)
initn: 986 init1: 841 opt: 851 Z-score: 909.8 bits: 175.6 E(85289): 6.2e-44
Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:70-219)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
NP_001 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::: :::
NP_001 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA---------------------
160 170 180 190
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
:::::::::::::::::::::.
NP_001 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
200 210 220 230 240 250
>>NP_001241881 (OMIM: 615556) alpha-tubulin N-acetyltran (310 aa)
initn: 986 init1: 841 opt: 851 Z-score: 909.5 bits: 175.6 E(85289): 6.4e-44
Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:70-219)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
NP_001 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::: :::
NP_001 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA---------------------
160 170 180 190
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
:::::::::::::::::::::.
NP_001 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
200 210 220 230 240 250
>>XP_016866805 (OMIM: 615556) PREDICTED: alpha-tubulin N (442 aa)
initn: 986 init1: 841 opt: 851 Z-score: 907.3 bits: 175.7 E(85289): 8.5e-44
Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:58-207)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
XP_016 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::: :::
XP_016 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA---------------------
150 160 170 180
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
:::::::::::::::::::::.
XP_016 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
190 200 210 220 230 240
>>XP_011513220 (OMIM: 615556) PREDICTED: alpha-tubulin N (266 aa)
initn: 159 init1: 159 opt: 161 Z-score: 180.5 bits: 40.5 E(85289): 0.0026
Smith-Waterman score: 161; 86.2% identity (93.1% similar) in 29 aa overlap (145-173:4-31)
120 130 140 150 160 170
pF1KE2 VIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAPARKLPPKRAEGDIKPYSSSDREWG
:: . :::::::::::::::::::::::.
XP_011 MTAPTDT-PARKLPPKRAEGDIKPYSSSDREFL
10 20 30
pF1KE2 LPQVW
XP_011 KVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPPHPT
40 50 60 70 80 90
179 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:58:56 2016 done: Tue Nov 8 16:58:57 2016
Total Scan time: 4.230 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]