Result of FASTA (ccds) for
pF1KE2604
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2604, 179 aa
1>>>pF1KE2604 179 - 179 aa - 179 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9694+/-0.000662; mu= 11.0999+/- 0.040
mean_var=88.6896+/-17.572, 0's: 0 Z-trim(112.6): 6 B-trim: 28 in 1/50
Lambda= 0.136188
statistics sampled from 13326 (13332) to 13326 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.41), width: 16
Scan time: 1.890
The best scores are: opt bits E(32554)
CCDS83072.1 ATAT1 gene_id:79969|Hs108|chr6 ( 323) 1154 235.7 2.1e-62
CCDS4683.2 ATAT1 gene_id:79969|Hs108|chr6 ( 333) 1154 235.7 2.1e-62
CCDS54978.1 ATAT1 gene_id:79969|Hs108|chr6 ( 409) 1154 235.8 2.5e-62
CCDS83073.1 ATAT1 gene_id:79969|Hs108|chr6 ( 300) 851 176.2 1.6e-44
CCDS59002.1 ATAT1 gene_id:79969|Hs108|chr6 ( 310) 851 176.2 1.7e-44
>>CCDS83072.1 ATAT1 gene_id:79969|Hs108|chr6 (323 aa)
initn: 1172 init1: 1154 opt: 1154 Z-score: 1233.9 bits: 235.7 E(32554): 2.1e-62
Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:70-242)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
CCDS83 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
160 170 180 190 200 210
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
::::::::::::::::::::::.
CCDS83 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
220 230 240 250 260 270
>>CCDS4683.2 ATAT1 gene_id:79969|Hs108|chr6 (333 aa)
initn: 1172 init1: 1154 opt: 1154 Z-score: 1233.7 bits: 235.7 E(32554): 2.1e-62
Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:70-242)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
CCDS46 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
160 170 180 190 200 210
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
::::::::::::::::::::::.
CCDS46 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
220 230 240 250 260 270
>>CCDS54978.1 ATAT1 gene_id:79969|Hs108|chr6 (409 aa)
initn: 1154 init1: 1154 opt: 1154 Z-score: 1232.4 bits: 235.8 E(32554): 2.5e-62
Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:58-230)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
CCDS54 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
150 160 170 180 190 200
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
::::::::::::::::::::::.
CCDS54 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
210 220 230 240 250 260
>>CCDS83073.1 ATAT1 gene_id:79969|Hs108|chr6 (300 aa)
initn: 986 init1: 841 opt: 851 Z-score: 912.7 bits: 176.2 E(32554): 1.6e-44
Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:70-219)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
CCDS83 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::: :::
CCDS83 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA---------------------
160 170 180 190
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
:::::::::::::::::::::.
CCDS83 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
200 210 220 230 240 250
>>CCDS59002.1 ATAT1 gene_id:79969|Hs108|chr6 (310 aa)
initn: 986 init1: 841 opt: 851 Z-score: 912.4 bits: 176.2 E(32554): 1.7e-44
Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:70-219)
10 20 30
pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV
::::::::::::::::::::::::::::::
CCDS59 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP
::::::::::::::::::::::::::::::::::: :::
CCDS59 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA---------------------
160 170 180 190
160 170
pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW
:::::::::::::::::::::.
CCDS59 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER
200 210 220 230 240 250
179 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:58:55 2016 done: Tue Nov 8 16:58:56 2016
Total Scan time: 1.890 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]