Result of FASTA (omim) for
pF1KE2602
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2602, 742 aa
1>>>pF1KE2602 742 - 742 aa - 742 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5914+/-0.000419; mu= 9.0065+/- 0.026
mean_var=142.2990+/-28.375, 0's: 0 Z-trim(115.3): 80 B-trim: 16 in 3/55
Lambda= 0.107516
statistics sampled from 25623 (25704) to 25623 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.301), width: 16
Scan time: 7.140
The best scores are: opt bits E(85289)
NP_000601 (OMIM: 107269,609027) CD44 antigen isofo ( 742) 5017 790.7 0
XP_005253288 (OMIM: 107269,609027) PREDICTED: CD44 ( 743) 5005 788.8 0
XP_006718451 (OMIM: 107269,609027) PREDICTED: CD44 ( 741) 5000 788.0 0
XP_005253289 (OMIM: 107269,609027) PREDICTED: CD44 ( 742) 4988 786.2 0
XP_011518784 (OMIM: 107269,609027) PREDICTED: CD44 ( 675) 3663 580.6 7.1e-165
NP_001001389 (OMIM: 107269,609027) CD44 antigen is ( 699) 3211 510.5 9.3e-144
XP_005253292 (OMIM: 107269,609027) PREDICTED: CD44 ( 700) 3196 508.2 4.7e-143
XP_016874072 (OMIM: 107269,609027) PREDICTED: CD44 ( 699) 2975 473.9 9.7e-133
XP_011518786 (OMIM: 107269,609027) PREDICTED: CD44 ( 657) 2959 471.4 5.2e-132
XP_011518785 (OMIM: 107269,609027) PREDICTED: CD44 ( 658) 2956 470.9 7.1e-132
XP_011518787 (OMIM: 107269,609027) PREDICTED: CD44 ( 656) 2942 468.8 3.2e-131
XP_011518789 (OMIM: 107269,609027) PREDICTED: CD44 ( 446) 2925 466.0 1.5e-130
XP_005253291 (OMIM: 107269,609027) PREDICTED: CD44 ( 702) 2415 387.0 1.4e-106
XP_005253290 (OMIM: 107269,609027) PREDICTED: CD44 ( 703) 2389 383.0 2.3e-105
XP_005253295 (OMIM: 107269,609027) PREDICTED: CD44 ( 580) 2382 381.9 4.1e-105
XP_005253296 (OMIM: 107269,609027) PREDICTED: CD44 ( 578) 2116 340.6 1.1e-92
XP_006718453 (OMIM: 107269,609027) PREDICTED: CD44 ( 397) 2100 338.0 4.4e-92
XP_016874073 (OMIM: 107269,609027) PREDICTED: CD44 ( 446) 2097 337.6 6.7e-92
XP_011518788 (OMIM: 107269,609027) PREDICTED: CD44 ( 537) 2086 335.9 2.5e-91
XP_005253297 (OMIM: 107269,609027) PREDICTED: CD44 ( 535) 1771 287.1 1.3e-76
NP_001001390 (OMIM: 107269,609027) CD44 antigen is ( 493) 1754 284.4 7.5e-76
XP_011518790 (OMIM: 107269,609027) PREDICTED: CD44 ( 425) 1548 252.4 2.8e-66
XP_011518791 (OMIM: 107269,609027) PREDICTED: CD44 ( 402) 1539 251.0 7e-66
XP_016874074 (OMIM: 107269,609027) PREDICTED: CD44 ( 403) 1539 251.0 7e-66
NP_001189484 (OMIM: 107269,609027) CD44 antigen is ( 429) 1533 250.1 1.4e-65
NP_001189486 (OMIM: 107269,609027) CD44 antigen is ( 294) 1527 249.1 2e-65
NP_001189485 (OMIM: 107269,609027) CD44 antigen is ( 340) 1527 249.1 2.2e-65
NP_001001391 (OMIM: 107269,609027) CD44 antigen is ( 361) 1527 249.1 2.3e-65
NP_001001392 (OMIM: 107269,609027) CD44 antigen is ( 139) 536 95.2 2e-19
NP_006682 (OMIM: 605702) lymphatic vessel endothel ( 322) 271 54.3 9.4e-07
>>NP_000601 (OMIM: 107269,609027) CD44 antigen isoform 1 (742 aa)
initn: 5017 init1: 5017 opt: 5017 Z-score: 4215.5 bits: 790.7 E(85289): 0
Smith-Waterman score: 5017; 99.7% identity (99.9% similar) in 742 aa overlap (1-742:1-742)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_000 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKEDS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_000 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSIT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
670 680 690 700 710 720
730 740
pF1KE2 PDQFMTADETRNLQNVDMKIGV
::::::::::::::::::::::
NP_000 PDQFMTADETRNLQNVDMKIGV
730 740
>>XP_005253288 (OMIM: 107269,609027) PREDICTED: CD44 ant (743 aa)
initn: 2665 init1: 2665 opt: 5005 Z-score: 4205.4 bits: 788.8 E(85289): 0
Smith-Waterman score: 5005; 99.6% identity (99.7% similar) in 743 aa overlap (1-742:1-743)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
250 260 270 280 290 300
310 320 330 340 350
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
XP_005 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
XP_005 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSI
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
670 680 690 700 710 720
720 730 740
pF1KE2 TPDQFMTADETRNLQNVDMKIGV
:::::::::::::::::::::::
XP_005 TPDQFMTADETRNLQNVDMKIGV
730 740
>>XP_006718451 (OMIM: 107269,609027) PREDICTED: CD44 ant (741 aa)
initn: 2944 init1: 2944 opt: 5000 Z-score: 4201.2 bits: 788.0 E(85289): 0
Smith-Waterman score: 5000; 99.6% identity (99.7% similar) in 742 aa overlap (1-742:1-741)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_006 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKEDS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT
:::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_006 HSTTGTAA-SAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSIT
430 440 450 460 470
490 500 510 520 530 540
pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
480 490 500 510 520 530
550 560 570 580 590 600
pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
540 550 560 570 580 590
610 620 630 640 650 660
pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
600 610 620 630 640 650
670 680 690 700 710 720
pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
660 670 680 690 700 710
730 740
pF1KE2 PDQFMTADETRNLQNVDMKIGV
::::::::::::::::::::::
XP_006 PDQFMTADETRNLQNVDMKIGV
720 730 740
>>XP_005253289 (OMIM: 107269,609027) PREDICTED: CD44 ant (742 aa)
initn: 4446 init1: 4446 opt: 4988 Z-score: 4191.2 bits: 786.2 E(85289): 0
Smith-Waterman score: 4988; 99.5% identity (99.6% similar) in 743 aa overlap (1-742:1-742)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
250 260 270 280 290 300
310 320 330 340 350
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
XP_005 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
XP_005 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST
::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHSTTGTAA-SAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSI
430 440 450 460 470
480 490 500 510 520 530
pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
480 490 500 510 520 530
540 550 560 570 580 590
pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
540 550 560 570 580 590
600 610 620 630 640 650
pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
600 610 620 630 640 650
660 670 680 690 700 710
pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
660 670 680 690 700 710
720 730 740
pF1KE2 TPDQFMTADETRNLQNVDMKIGV
:::::::::::::::::::::::
XP_005 TPDQFMTADETRNLQNVDMKIGV
720 730 740
>>XP_011518784 (OMIM: 107269,609027) PREDICTED: CD44 ant (675 aa)
initn: 3684 init1: 2384 opt: 3663 Z-score: 3081.0 bits: 580.6 E(85289): 7.1e-165
Smith-Waterman score: 4411; 90.3% identity (90.4% similar) in 743 aa overlap (1-742:1-675)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
250 260 270 280 290 300
310 320 330 340 350
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
XP_011 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
XP_011 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSI
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSR---
490 500 510 520 530
540 550 560 570 580 590
pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
XP_011 ------------------------------------------------------------
600 610 620 630 640 650
pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 -----DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
540 550 560 570 580 590
660 670 680 690 700 710
pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
600 610 620 630 640 650
720 730 740
pF1KE2 TPDQFMTADETRNLQNVDMKIGV
:::::::::::::::::::::::
XP_011 TPDQFMTADETRNLQNVDMKIGV
660 670
>>NP_001001389 (OMIM: 107269,609027) CD44 antigen isofor (699 aa)
initn: 3196 init1: 3196 opt: 3211 Z-score: 2701.9 bits: 510.5 E(85289): 9.3e-144
Smith-Waterman score: 4629; 93.8% identity (94.1% similar) in 742 aa overlap (1-742:1-699)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::.
NP_001 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATS-----------------
190 200 210 220
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
::::::::::::::::::::::::::::::::::
NP_001 --------------------------TSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
230 240 250
310 320 330 340 350 360
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
260 270 280 290 300 310
370 380 390 400 410 420
pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKEDS
320 330 340 350 360 370
430 440 450 460 470 480
pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_001 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSIT
380 390 400 410 420 430
490 500 510 520 530 540
pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
440 450 460 470 480 490
550 560 570 580 590 600
pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
500 510 520 530 540 550
610 620 630 640 650 660
pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
560 570 580 590 600 610
670 680 690 700 710 720
pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
620 630 640 650 660 670
730 740
pF1KE2 PDQFMTADETRNLQNVDMKIGV
::::::::::::::::::::::
NP_001 PDQFMTADETRNLQNVDMKIGV
680 690
>>XP_005253292 (OMIM: 107269,609027) PREDICTED: CD44 ant (700 aa)
initn: 4190 init1: 2665 opt: 3196 Z-score: 2689.3 bits: 508.2 E(85289): 4.7e-143
Smith-Waterman score: 4617; 93.7% identity (93.9% similar) in 743 aa overlap (1-742:1-700)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::.
XP_005 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATS-----------------
190 200 210 220
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
::::::::::::::::::::::::::::::::::
XP_005 --------------------------TSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
230 240 250
310 320 330 340 350
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
XP_005 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW
260 270 280 290 300 310
360 370 380 390 400 410
pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
XP_005 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED
320 330 340 350 360 370
420 430 440 450 460 470
pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSI
380 390 400 410 420 430
480 490 500 510 520 530
pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
440 450 460 470 480 490
540 550 560 570 580 590
pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
500 510 520 530 540 550
600 610 620 630 640 650
pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
560 570 580 590 600 610
660 670 680 690 700 710
pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
620 630 640 650 660 670
720 730 740
pF1KE2 TPDQFMTADETRNLQNVDMKIGV
:::::::::::::::::::::::
XP_005 TPDQFMTADETRNLQNVDMKIGV
680 690 700
>>XP_016874072 (OMIM: 107269,609027) PREDICTED: CD44 ant (699 aa)
initn: 4130 init1: 2384 opt: 2975 Z-score: 2504.1 bits: 473.9 E(85289): 9.7e-133
Smith-Waterman score: 4587; 93.7% identity (93.8% similar) in 743 aa overlap (1-742:1-699)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
250 260 270 280 290 300
310 320 330 340 350
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
XP_016 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
XP_016 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST
:::::::: :::::::
XP_016 SHSTTGTA--------------------------------------------DMDSSHSI
430
480 490 500 510 520 530
pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
440 450 460 470 480 490
540 550 560 570 580 590
pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
500 510 520 530 540 550
600 610 620 630 640 650
pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
560 570 580 590 600 610
660 670 680 690 700 710
pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
620 630 640 650 660 670
720 730 740
pF1KE2 TPDQFMTADETRNLQNVDMKIGV
:::::::::::::::::::::::
XP_016 TPDQFMTADETRNLQNVDMKIGV
680 690
>>XP_011518786 (OMIM: 107269,609027) PREDICTED: CD44 ant (657 aa)
initn: 2948 init1: 2948 opt: 2959 Z-score: 2491.0 bits: 471.4 E(85289): 5.2e-132
Smith-Waterman score: 4269; 88.3% identity (88.4% similar) in 742 aa overlap (1-742:1-657)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT------------------
190 200 210 220
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
XP_011 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 -------ISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
230 240 250 260 270
370 380 390 400 410 420
pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_011 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKEDS
280 290 300 310 320 330
430 440 450 460 470 480
pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_011 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSIT
340 350 360 370 380 390
490 500 510 520 530 540
pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
400 410 420 430 440 450
550 560 570 580 590 600
pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
460 470 480 490 500 510
610 620 630 640 650 660
pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
520 530 540 550 560 570
670 680 690 700 710 720
pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
580 590 600 610 620 630
730 740
pF1KE2 PDQFMTADETRNLQNVDMKIGV
::::::::::::::::::::::
XP_011 PDQFMTADETRNLQNVDMKIGV
640 650
>>XP_011518785 (OMIM: 107269,609027) PREDICTED: CD44 ant (658 aa)
initn: 4183 init1: 2665 opt: 2956 Z-score: 2488.5 bits: 470.9 E(85289): 7.1e-132
Smith-Waterman score: 4257; 88.2% identity (88.3% similar) in 743 aa overlap (1-742:1-658)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT------------------
190 200 210 220
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
XP_011 ------------------------------------------------------------
310 320 330 340 350
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW
:::::::::::::::::::::::::::::::::::::: ::::::::::::::
XP_011 -------ISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW
230 240 250 260 270
360 370 380 390 400 410
pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
XP_011 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED
280 290 300 310 320 330
420 430 440 450 460 470
pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSI
340 350 360 370 380 390
480 490 500 510 520 530
pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND
400 410 420 430 440 450
540 550 560 570 580 590
pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN
460 470 480 490 500 510
600 610 620 630 640 650
pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA
520 530 540 550 560 570
660 670 680 690 700 710
pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE
580 590 600 610 620 630
720 730 740
pF1KE2 TPDQFMTADETRNLQNVDMKIGV
:::::::::::::::::::::::
XP_011 TPDQFMTADETRNLQNVDMKIGV
640 650
742 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:58:25 2016 done: Tue Nov 8 16:58:26 2016
Total Scan time: 7.140 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]