Result of FASTA (ccds) for
pF1KE2602
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2602, 742 aa
1>>>pF1KE2602 742 - 742 aa - 742 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1215+/-0.00101; mu= 11.7646+/- 0.061
mean_var=116.9098+/-22.925, 0's: 0 Z-trim(107.5): 42 B-trim: 0 in 0/52
Lambda= 0.118617
statistics sampled from 9606 (9636) to 9606 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.296), width: 16
Scan time: 3.270
The best scores are: opt bits E(32554)
CCDS7897.1 CD44 gene_id:960|Hs108|chr11 ( 742) 5017 870.1 0
CCDS31455.1 CD44 gene_id:960|Hs108|chr11 ( 699) 3211 561.1 2.1e-159
CCDS31456.1 CD44 gene_id:960|Hs108|chr11 ( 493) 1754 311.7 1.8e-84
CCDS55754.1 CD44 gene_id:960|Hs108|chr11 ( 429) 1533 273.8 3.9e-73
CCDS55755.1 CD44 gene_id:960|Hs108|chr11 ( 340) 1527 272.7 6.5e-73
CCDS31457.1 CD44 gene_id:960|Hs108|chr11 ( 361) 1527 272.7 6.9e-73
CCDS31458.1 CD44 gene_id:960|Hs108|chr11 ( 139) 536 102.9 3.4e-22
>>CCDS7897.1 CD44 gene_id:960|Hs108|chr11 (742 aa)
initn: 5017 init1: 5017 opt: 5017 Z-score: 4645.1 bits: 870.1 E(32554): 0
Smith-Waterman score: 5017; 99.7% identity (99.9% similar) in 742 aa overlap (1-742:1-742)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS78 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKEDS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS78 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSIT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
670 680 690 700 710 720
730 740
pF1KE2 PDQFMTADETRNLQNVDMKIGV
::::::::::::::::::::::
CCDS78 PDQFMTADETRNLQNVDMKIGV
730 740
>>CCDS31455.1 CD44 gene_id:960|Hs108|chr11 (699 aa)
initn: 3196 init1: 3196 opt: 3211 Z-score: 2975.2 bits: 561.1 E(32554): 2.1e-159
Smith-Waterman score: 4629; 93.8% identity (94.1% similar) in 742 aa overlap (1-742:1-699)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::.
CCDS31 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATS-----------------
190 200 210 220
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
::::::::::::::::::::::::::::::::::
CCDS31 --------------------------TSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
230 240 250
310 320 330 340 350 360
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
260 270 280 290 300 310
370 380 390 400 410 420
pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS31 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKEDS
320 330 340 350 360 370
430 440 450 460 470 480
pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS31 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSIT
380 390 400 410 420 430
490 500 510 520 530 540
pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
440 450 460 470 480 490
550 560 570 580 590 600
pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
500 510 520 530 540 550
610 620 630 640 650 660
pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
560 570 580 590 600 610
670 680 690 700 710 720
pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
620 630 640 650 660 670
730 740
pF1KE2 PDQFMTADETRNLQNVDMKIGV
::::::::::::::::::::::
CCDS31 PDQFMTADETRNLQNVDMKIGV
680 690
>>CCDS31456.1 CD44 gene_id:960|Hs108|chr11 (493 aa)
initn: 1754 init1: 1754 opt: 1754 Z-score: 1630.0 bits: 311.7 E(32554): 1.8e-84
Smith-Waterman score: 2773; 66.2% identity (66.3% similar) in 742 aa overlap (1-742:1-493)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT------------------
190 200 210 220
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
CCDS31 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
CCDS31 ------------------------------------------------------------
370 380 390 400 410 420
pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS
CCDS31 ------------------------------------------------------------
430 440 450 460 470 480
pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT
.:::::: :
CCDS31 ---------------------------------------------------NMDSSHSIT
230
490 500 510 520 530 540
pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
240 250 260 270 280 290
550 560 570 580 590 600
pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
300 310 320 330 340 350
610 620 630 640 650 660
pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
360 370 380 390 400 410
670 680 690 700 710 720
pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
420 430 440 450 460 470
730 740
pF1KE2 PDQFMTADETRNLQNVDMKIGV
::::::::::::::::::::::
CCDS31 PDQFMTADETRNLQNVDMKIGV
480 490
>>CCDS55754.1 CD44 gene_id:960|Hs108|chr11 (429 aa)
initn: 1555 init1: 1527 opt: 1533 Z-score: 1426.5 bits: 273.8 E(32554): 3.9e-73
Smith-Waterman score: 2247; 57.8% identity (57.8% similar) in 742 aa overlap (1-742:1-429)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT------------------
190 200 210 220
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
CCDS55 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
CCDS55 ------------------------------------------------------------
370 380 390 400 410 420
pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS
CCDS55 ------------------------------------------------------------
430 440 450 460 470 480
pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT
CCDS55 ------------------------------------------------------------
490 500 510 520 530 540
pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
:::::
CCDS55 -------------------------------------------------------NRNDV
550 560 570 580 590 600
pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
230 240 250 260 270 280
610 620 630 640 650 660
pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
290 300 310 320 330 340
670 680 690 700 710 720
pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
350 360 370 380 390 400
730 740
pF1KE2 PDQFMTADETRNLQNVDMKIGV
::::::::::::::::::::::
CCDS55 PDQFMTADETRNLQNVDMKIGV
410 420
>>CCDS55755.1 CD44 gene_id:960|Hs108|chr11 (340 aa)
initn: 2270 init1: 1527 opt: 1527 Z-score: 1422.5 bits: 272.7 E(32554): 6.5e-73
Smith-Waterman score: 1527; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRHSHGSQEGGANTTSGPI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
CCDS55 RTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGE
250 260 270 280 290 300
>--
initn: 757 init1: 757 opt: 757 Z-score: 710.3 bits: 141.0 E(32554): 3e-33
Smith-Waterman score: 757; 100.0% identity (100.0% similar) in 117 aa overlap (626-742:224-340)
600 610 620 630 640 650
pF1KE2 SNVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILA
::::::::::::::::::::::::::::::
CCDS55 IFYTFSTVHPIPDEDSPWITDSTDRIPATRHSHGSQEGGANTTSGPIRTPQIPEWLIILA
200 210 220 230 240 250
660 670 680 690 700 710
pF1KE2 SLLALALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SLLALALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNK
260 270 280 290 300 310
720 730 740
pF1KE2 ESSETPDQFMTADETRNLQNVDMKIGV
:::::::::::::::::::::::::::
CCDS55 ESSETPDQFMTADETRNLQNVDMKIGV
320 330 340
>>CCDS31457.1 CD44 gene_id:960|Hs108|chr11 (361 aa)
initn: 2422 init1: 1527 opt: 1527 Z-score: 1422.1 bits: 272.7 E(32554): 6.9e-73
Smith-Waterman score: 1663; 48.5% identity (48.5% similar) in 742 aa overlap (1-742:1-361)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE
::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATR-----------------
190 200 210 220
250 260 270 280 290 300
pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD
CCDS31 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN
CCDS31 ------------------------------------------------------------
370 380 390 400 410 420
pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS
CCDS31 ------------------------------------------------------------
430 440 450 460 470 480
pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT
CCDS31 ------------------------------------------------------------
490 500 510 520 530 540
pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV
CCDS31 ------------------------------------------------------------
550 560 570 580 590 600
pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR
CCDS31 ------------------------------------------------------------
610 620 630 640 650 660
pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ----DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL
230 240 250 260 270
670 680 690 700 710 720
pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET
280 290 300 310 320 330
730 740
pF1KE2 PDQFMTADETRNLQNVDMKIGV
::::::::::::::::::::::
CCDS31 PDQFMTADETRNLQNVDMKIGV
340 350 360
>>CCDS31458.1 CD44 gene_id:960|Hs108|chr11 (139 aa)
initn: 576 init1: 536 opt: 536 Z-score: 511.8 bits: 102.9 E(32554): 3.4e-22
Smith-Waterman score: 536; 100.0% identity (100.0% similar) in 77 aa overlap (1-77:1-77)
10 20 30 40 50 60
pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
:::::::::::::::::
CCDS31 PTMAQMEKALSIGFETCSLHCSQQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQVSG
70 80 90 100 110 120
742 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:58:25 2016 done: Tue Nov 8 16:58:25 2016
Total Scan time: 3.270 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]