Result of FASTA (ccds) for
pF1KE2577
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2577, 323 aa
1>>>pF1KE2577 323 - 323 aa - 323 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3451+/-0.000801; mu= 11.8569+/- 0.048
mean_var=103.1486+/-20.555, 0's: 0 Z-trim(111.1): 119 B-trim: 42 in 1/49
Lambda= 0.126282
statistics sampled from 11991 (12112) to 11991 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.372), width: 16
Scan time: 2.670
The best scores are: opt bits E(32554)
CCDS61469.1 ESR2 gene_id:2100|Hs108|chr14 ( 439) 2230 416.5 2e-116
CCDS61470.1 ESR2 gene_id:2100|Hs108|chr14 ( 474) 2223 415.2 5.1e-116
CCDS55920.1 ESR2 gene_id:2100|Hs108|chr14 ( 481) 2223 415.2 5.2e-116
CCDS32096.1 ESR2 gene_id:2100|Hs108|chr14 ( 495) 2223 415.2 5.3e-116
CCDS9762.1 ESR2 gene_id:2100|Hs108|chr14 ( 530) 2223 415.2 5.6e-116
CCDS5234.1 ESR1 gene_id:2099|Hs108|chr6 ( 595) 601 119.8 5.6e-27
CCDS58061.1 ESRRG gene_id:2104|Hs108|chr1 ( 470) 511 103.3 4e-22
CCDS41667.1 ESRRA gene_id:2101|Hs108|chr11 ( 423) 472 96.2 5e-20
CCDS60830.1 ESRRA gene_id:2101|Hs108|chr11 ( 422) 467 95.2 9.4e-20
CCDS43965.1 AR gene_id:367|Hs108|chrX ( 388) 408 84.5 1.5e-16
CCDS14387.1 AR gene_id:367|Hs108|chrX ( 920) 408 84.7 3e-16
CCDS8310.1 PGR gene_id:5241|Hs108|chr11 ( 933) 407 84.5 3.5e-16
CCDS47298.1 NR3C1 gene_id:2908|Hs108|chr5 ( 742) 399 83.0 7.9e-16
CCDS4278.1 NR3C1 gene_id:2908|Hs108|chr5 ( 777) 399 83.0 8.2e-16
CCDS1517.1 ESRRG gene_id:2104|Hs108|chr1 ( 435) 395 82.1 8.6e-16
CCDS41468.1 ESRRG gene_id:2104|Hs108|chr1 ( 458) 395 82.2 8.9e-16
CCDS9850.2 ESRRB gene_id:2103|Hs108|chr14 ( 508) 394 82.0 1.1e-15
CCDS34258.1 NR3C1 gene_id:2908|Hs108|chr5 ( 778) 387 80.8 3.8e-15
CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 359 75.6 7.6e-14
CCDS44584.1 NR1H3 gene_id:10062|Hs108|chr11 ( 387) 353 74.5 1.6e-13
CCDS44585.1 NR1H3 gene_id:10062|Hs108|chr11 ( 402) 353 74.5 1.6e-13
CCDS7929.1 NR1H3 gene_id:10062|Hs108|chr11 ( 447) 353 74.5 1.8e-13
CCDS73285.1 NR1H3 gene_id:10062|Hs108|chr11 ( 453) 353 74.5 1.8e-13
CCDS2201.1 NR4A2 gene_id:4929|Hs108|chr2 ( 598) 350 74.0 3.3e-13
CCDS11366.1 RARA gene_id:5914|Hs108|chr17 ( 462) 342 72.5 7.3e-13
CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 ( 533) 340 72.2 1e-12
CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 ( 537) 340 72.2 1.1e-12
CCDS3772.1 NR3C2 gene_id:4306|Hs108|chr4 ( 984) 343 72.9 1.2e-12
CCDS42317.1 RARA gene_id:5914|Hs108|chr17 ( 457) 334 71.0 2e-12
CCDS6743.1 NR4A3 gene_id:8013|Hs108|chr9 ( 626) 335 71.3 2.2e-12
CCDS6742.1 NR4A3 gene_id:8013|Hs108|chr9 ( 637) 335 71.3 2.3e-12
CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 ( 598) 334 71.1 2.5e-12
CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 ( 611) 334 71.1 2.5e-12
CCDS54811.1 NR3C2 gene_id:4306|Hs108|chr4 ( 867) 336 71.6 2.6e-12
CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 ( 652) 334 71.1 2.6e-12
CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 ( 422) 330 70.3 3.1e-12
CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 ( 340) 328 69.9 3.3e-12
CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 328 69.9 3.7e-12
CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 328 69.9 4.1e-12
CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 328 69.9 4.2e-12
CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 ( 463) 328 70.0 4.3e-12
CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 ( 385) 324 69.2 6.1e-12
CCDS10177.1 RORA gene_id:6095|Hs108|chr15 ( 523) 323 69.1 8.8e-12
CCDS2642.1 RARB gene_id:5915|Hs108|chr3 ( 448) 322 68.8 8.9e-12
CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 ( 414) 318 68.1 1.4e-11
CCDS13331.1 HNF4A gene_id:3172|Hs108|chr20 ( 417) 318 68.1 1.4e-11
CCDS6744.1 NR4A3 gene_id:8013|Hs108|chr9 ( 443) 318 68.1 1.5e-11
CCDS68131.1 HNF4A gene_id:3172|Hs108|chr20 ( 395) 317 67.9 1.5e-11
CCDS46605.1 HNF4A gene_id:3172|Hs108|chr20 ( 464) 318 68.1 1.5e-11
CCDS13330.1 HNF4A gene_id:3172|Hs108|chr20 ( 474) 318 68.1 1.5e-11
>>CCDS61469.1 ESR2 gene_id:2100|Hs108|chr14 (439 aa)
initn: 2230 init1: 2230 opt: 2230 Z-score: 2203.7 bits: 416.5 E(32554): 2e-116
Smith-Waterman score: 2230; 100.0% identity (100.0% similar) in 319 aa overlap (1-319:1-319)
10 20 30 40 50 60
pF1KE2 MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYPAMTFYSPAVMNYSIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYPAMTFYSPAVMNYSIPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEPQKSPWCEARSLEHTLPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 NVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEPQKSPWCEARSLEHTLPVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 RETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 CAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 CAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTK
250 260 270 280 290 300
310 320
pF1KE2 LADKELVHMISWAKKIPGMRGNA
:::::::::::::::::::
CCDS61 LADKELVHMISWAKKIPGMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQ
310 320 330 340 350 360
>>CCDS61470.1 ESR2 gene_id:2100|Hs108|chr14 (474 aa)
initn: 2223 init1: 2223 opt: 2223 Z-score: 2196.4 bits: 415.2 E(32554): 5.1e-116
Smith-Waterman score: 2223; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KE2 MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYPAMTFYSPAVMNYSIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYPAMTFYSPAVMNYSIPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEPQKSPWCEARSLEHTLPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 NVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEPQKSPWCEARSLEHTLPVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 RETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 CAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 CAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTK
250 260 270 280 290 300
310 320
pF1KE2 LADKELVHMISWAKKIPGMRGNA
::::::::::::::::::
CCDS61 LADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDL
310 320 330 340 350 360
>>CCDS55920.1 ESR2 gene_id:2100|Hs108|chr14 (481 aa)
initn: 2223 init1: 2223 opt: 2223 Z-score: 2196.3 bits: 415.2 E(32554): 5.2e-116
Smith-Waterman score: 2223; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KE2 MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYPAMTFYSPAVMNYSIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYPAMTFYSPAVMNYSIPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEPQKSPWCEARSLEHTLPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEPQKSPWCEARSLEHTLPVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 RETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 CAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTK
250 260 270 280 290 300
310 320
pF1KE2 LADKELVHMISWAKKIPGMRGNA
::::::::::::::::::
CCDS55 LADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDL
310 320 330 340 350 360
>>CCDS32096.1 ESR2 gene_id:2100|Hs108|chr14 (495 aa)
initn: 2223 init1: 2223 opt: 2223 Z-score: 2196.1 bits: 415.2 E(32554): 5.3e-116
Smith-Waterman score: 2223; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KE2 MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYPAMTFYSPAVMNYSIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYPAMTFYSPAVMNYSIPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEPQKSPWCEARSLEHTLPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEPQKSPWCEARSLEHTLPVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 RETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 CAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTK
250 260 270 280 290 300
310 320
pF1KE2 LADKELVHMISWAKKIPGMRGNA
::::::::::::::::::
CCDS32 LADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDL
310 320 330 340 350 360
>>CCDS9762.1 ESR2 gene_id:2100|Hs108|chr14 (530 aa)
initn: 2223 init1: 2223 opt: 2223 Z-score: 2195.7 bits: 415.2 E(32554): 5.6e-116
Smith-Waterman score: 2223; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KE2 MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYPAMTFYSPAVMNYSIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYPAMTFYSPAVMNYSIPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEPQKSPWCEARSLEHTLPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 NVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEPQKSPWCEARSLEHTLPVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 RETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 CAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 CAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTK
250 260 270 280 290 300
310 320
pF1KE2 LADKELVHMISWAKKIPGMRGNA
::::::::::::::::::
CCDS97 LADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDL
310 320 330 340 350 360
>>CCDS5234.1 ESR1 gene_id:2099|Hs108|chr6 (595 aa)
initn: 810 init1: 569 opt: 601 Z-score: 597.9 bits: 119.8 E(32554): 5.6e-27
Smith-Waterman score: 806; 44.3% identity (64.9% similar) in 345 aa overlap (17-318:27-366)
10 20 30 40
pF1KE2 MDIKNSPSSLNSPSSYNCSQSILPLEH--GSIYIPSSY--VDSHHEYPAM
: : .:::. : .:. :: : .. : :.
CCDS52 MTMTLHTKASGMALLHQIQGNELEPLNRPQLKIPLERPLGEVYLDSSKPAVYNYPEGAAY
10 20 30 40 50 60
50 60 70 80
pF1KE2 TFYSPAVMNYSIPSNVTNLEGGPGRQ------------------TTSPNVLWPTPGHLSP
: . :. : .. .. :.: ::: . . :: .: : .:::
CCDS52 EFNAAAAANAQVYGQ-TGLPYGPGSEAAAFGSNGLGGFPPLNSVSPSPLMLLHPPPQLSP
70 80 90 100 110
90 100 110 120 130 140
pF1KE2 LVV-HRQLSHLYAEPQKSPWC--EARSLEHTLPVNRETLKRKVSGNRCASPVTGPGS---
.. : : : : . : . :: : : .. .:. . .: :: .. ::
CCDS52 FLQPHGQQVPYYLENEPSGYTVREAGPPAFYRP-NSDN-RRQGGRERLAS-TNDKGSMAM
120 130 140 150 160 170
150 160 170 180 190 200
pF1KE2 --KRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYICPATNQCTIDKNRRKS
.....::::.::::::::::::::::::::::::::::::.::::::::::::::::
CCDS52 ESAKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKS
180 190 200 210 220 230
210 220 230 240 250
pF1KE2 CQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADE-----QLHCAGKAKRSG-GHAPR
::::::::::::::.: : :..: : :.....:. :. .. :: . .. .:
CCDS52 CQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRGEVGSAGDMRAANLWPSPL
240 250 260 270 280 290
260 270 280 290 300
pF1KE2 V-----RELLLDALSPEQLVLTLLEAEPPHVLISR--PSAPFTEASMMMSLTKLADKELV
. .. : .:. .:.: .::.:::: .: :. :. ::.::::: ::.:::.:::
CCDS52 MIKRSKKNSLALSLTADQMVSALLDAEPP-ILYSEYDPTRPFSEASMMGLLTNLADRELV
300 310 320 330 340 350
310 320
pF1KE2 HMISWAKKIPGMRGNA
:::.:::..::
CCDS52 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQG
360 370 380 390 400 410
>>CCDS58061.1 ESRRG gene_id:2104|Hs108|chr1 (470 aa)
initn: 518 init1: 377 opt: 511 Z-score: 510.7 bits: 103.3 E(32554): 4e-22
Smith-Waterman score: 511; 46.6% identity (69.5% similar) in 174 aa overlap (148-318:132-300)
120 130 140 150 160 170
pF1KE2 PVNRETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSI
.: ::.: :::::::: :::.:::::::.:
CCDS58 VRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLVCGDIASGYHYGVASCEACKAFFKRTI
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE2 QGHNDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSR--RERCGYRLVRRQRSA
::. .: :::::.: : : :::::::::. :: .:::.: : : : : : . .:. .:
CCDS58 QGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE2 DEQLHCAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVL-ISRPSAPFTEASM
... . . . : . :: . . ...: :: ::: .. . :..: .. .
CCDS58 ENSPYLNPQLVQ-----PAKKPLLWSDPADNKIVSHLLVAEPEKIYAMPDPTVPDSDIKA
230 240 250 260 270
300 310 320
pF1KE2 MMSLTKLADKELVHMISWAKKIPGMRGNA
. .: :::.::: .:.:::.:::
CCDS58 LTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDEL
280 290 300 310 320 330
>>CCDS41667.1 ESRRA gene_id:2101|Hs108|chr11 (423 aa)
initn: 409 init1: 409 opt: 472 Z-score: 473.0 bits: 96.2 E(32554): 5e-20
Smith-Waterman score: 472; 46.1% identity (62.9% similar) in 178 aa overlap (148-318:78-248)
120 130 140 150 160 170
pF1KE2 PVNRETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSI
.: ::.: :::::::: :::.:::::::.:
CCDS41 PGHKEEEDGEGAGPGEQGGGKLVLSSLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTI
50 60 70 80 90 100
180 190 200 210 220 230
pF1KE2 QGHNDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERC-GYRLVRRQRSAD
:: .: :::.:.: : : :::.:::::. :: .:::.: : : .: : : ..:
CCDS41 QGSIEYSCPASNECEITKRRRKACQACRFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEV
110 120 130 140 150 160
240 250 260 270 280 290
pF1KE2 EQLHC-----AGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAEPPHVL-ISRPSAPFT
. : :: .:: :: ..:: : :: .:: .. . :..:
CCDS41 DPLPFPGPFPAGPLAVAGG--PRKTAAPVNAL-----VSHLLVVEPEKLYAMPDPAGPDG
170 180 190 200 210 220
300 310 320
pF1KE2 EASMMMSLTKLADKELVHMISWAKKIPGMRGNA
. . .: : :.:.: :::::.:::
CCDS41 HLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPL
230 240 250 260 270 280
>>CCDS60830.1 ESRRA gene_id:2101|Hs108|chr11 (422 aa)
initn: 440 init1: 368 opt: 467 Z-score: 468.1 bits: 95.2 E(32554): 9.4e-20
Smith-Waterman score: 467; 45.8% identity (62.6% similar) in 179 aa overlap (148-318:78-247)
120 130 140 150 160 170
pF1KE2 PVNRETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSI
.: ::.: :::::::: :::.:::::::.:
CCDS60 PGHKEEEDGEGAGPGEQGGGKLVLSSLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTI
50 60 70 80 90 100
180 190 200 210 220 230
pF1KE2 QGHNDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERC-GYRLVRRQRSAD
:: .: :::.:.: : : :::.:::::. :: .:::.: : : .: : : ..:
CCDS60 QGSIEYSCPASNECEITKRRRKACQACRFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEV
110 120 130 140 150 160
240 250 260 270 280
pF1KE2 EQLHC-----AGKAKRSGGHAPRVRELLLDALSP-EQLVLTLLEAEPPHVL-ISRPSAPF
. : :: .:: :: .: . :: :: .:: .. . :..:
CCDS60 DPLPFPGPFPAGPLAVAGG--PR-------KTAPVNALVSHLLVVEPEKLYAMPDPAGPD
170 180 190 200 210
290 300 310 320
pF1KE2 TEASMMMSLTKLADKELVHMISWAKKIPGMRGNA
. . .: : :.:.: :::::.:::
CCDS60 GHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLP
220 230 240 250 260 270
>>CCDS43965.1 AR gene_id:367|Hs108|chrX (388 aa)
initn: 404 init1: 318 opt: 408 Z-score: 410.5 bits: 84.5 E(32554): 1.5e-16
Smith-Waterman score: 419; 36.5% identity (69.1% similar) in 178 aa overlap (149-320:28-195)
120 130 140 150 160 170
pF1KE2 VNRETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQ
: .:.: ::: :::. .: .::.::::. .
CCDS43 MILWLHSLETARDHVLPIDYYFPPQKTCLICGDEASGCHYGALTCGSCKVFFKRAAE
10 20 30 40 50
180 190 200 210 220 230
pF1KE2 GHNDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQ
:.. :.: . :.::::: :::.: .::::::::.::. :.:. . . .. .
CCDS43 GKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMT-LGARKLK---------KLGNLK
60 70 80 90 100
240 250 260 270 280 290
pF1KE2 LHCAGKAKRSGGHAPRVRELL----LDALSPEQLVLTLLEAEPPHVLIS--RPSAPFTEA
:. :.:. . . . .. . : ... . . :..::: : :. . . : . :
CCDS43 LQEEGEASSTTSPTEETTQKLTVSHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFA
110 120 130 140 150 160
300 310 320
pF1KE2 SMMMSLTKLADKELVHMISWAKKIPGMRGNA
... ::..:....:::...::: .::.:
CCDS43 ALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVN
170 180 190 200 210 220
323 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:09:37 2016 done: Fri Nov 4 18:09:38 2016
Total Scan time: 2.670 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]