FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2570, 526 aa
  1>>>pF1KE2570 526 - 526 aa - 526 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.2087+/-0.000991; mu= -14.3812+/- 0.059
 mean_var=308.6786+/-63.785, 0's: 0 Z-trim(113.7): 38  B-trim: 0 in 0/51
 Lambda= 0.073000
 statistics sampled from 14304 (14334) to 14304 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.44), width:  16
 Scan time:  4.020

The best scores are:                                      opt bits E(32554)
CCDS47714.1 PODXL gene_id:5420|Hs108|chr7          ( 526) 3360 367.4 2.2e-101
CCDS34755.1 PODXL gene_id:5420|Hs108|chr7          ( 558) 1978 221.9 1.5e-57


>>CCDS47714.1 PODXL gene_id:5420|Hs108|chr7               (526 aa)
 initn: 3360 init1: 3360 opt: 3360  Z-score: 1933.5  bits: 367.4 E(32554): 2.2e-101
Smith-Waterman score: 3360; 100.0% identity (100.0% similar) in 526 aa overlap (1-526:1-526)

               10        20        30        40        50        60
pF1KE2 MRCALALSALLLLLSTPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MRCALALSALLLLLSTPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 AQQSTVPTSKANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGNPTTTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AQQSTVPTSKANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGNPTTTI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 ESPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTDLTSTKAEHLTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ESPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTDLTSTKAEHLTT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 PHPTSPLSPRQPTSTHPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTLPSSVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PHPTSPLSPRQPTSTHPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTLPSSVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 SQRTQQTSSQMPASSTAPSSQETVQPTSPATALRTPTLPETMSSSPTAASTTHRYPKTPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SQRTQQTSSQMPASSTAPSSQETVQPTSPATALRTPTLPETMSSSPTAASTTHRYPKTPS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 PTVAHESNWAKCEDLETQTQSEKQLVLNLTGNTLCAGGASDEKLISLICRAVKATFNPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PTVAHESNWAKCEDLETQTQSEKQLVLNLTGNTLCAGGASDEKLISLICRAVKATFNPAQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 DKCGIRLASVPGSQTVVVKEITIHTKLPAKDVYERLKDKWDELKEAGVSDMKLGDQGPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DKCGIRLASVPGSQTVVVKEITIHTKLPAKDVYERLKDKWDELKEAGVSDMKLGDQGPPE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 EAEDRFSMPLIITIVCMASFLLLVAALYGCCHQRLSQRKDQQRLTEELQTVENGYHDNPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EAEDRFSMPLIITIVCMASFLLLVAALYGCCHQRLSQRKDQQRLTEELQTVENGYHDNPT
              430       440       450       460       470       480

              490       500       510       520      
pF1KE2 LEVMETSSEMQEKKVVSLNGELGDSWIVPLDNLTKDDLDEEEDTHL
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LEVMETSSEMQEKKVVSLNGELGDSWIVPLDNLTKDDLDEEEDTHL
              490       500       510       520      

>>CCDS34755.1 PODXL gene_id:5420|Hs108|chr7               (558 aa)
 initn: 2074 init1: 1892 opt: 1978  Z-score: 1146.5  bits: 221.9 E(32554): 1.5e-57
Smith-Waterman score: 3276; 94.3% identity (94.3% similar) in 558 aa overlap (1-526:1-558)

               10        20        30        40        50        60
pF1KE2 MRCALALSALLLLLSTPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MRCALALSALLLLLSTPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 AQQSTVPTSKANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGNPTTTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AQQSTVPTSKANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGNPTTTI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 ESPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTDLTSTKAEHLTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ESPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTDLTSTKAEHLTT
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KE2 PHPTSPLSPRQPTSTHPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTL-----
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS34 PHPTSPLSPRQPTSTHPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTLLETVF
              190       200       210       220       230       240

                                    240       250       260        
pF1KE2 ----------------P-----------SSVISQRTQQTSSQMPASSTAPSSQETVQPTS
                       :           ::::::::::::::::::::::::::::::::
CCDS34 HHVSQAGLELLTSGDLPTLASQSAGITASSVISQRTQQTSSQMPASSTAPSSQETVQPTS
              250       260       270       280       290       300

      270       280       290       300       310       320        
pF1KE2 PATALRTPTLPETMSSSPTAASTTHRYPKTPSPTVAHESNWAKCEDLETQTQSEKQLVLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PATALRTPTLPETMSSSPTAASTTHRYPKTPSPTVAHESNWAKCEDLETQTQSEKQLVLN
              310       320       330       340       350       360

      330       340       350       360       370       380        
pF1KE2 LTGNTLCAGGASDEKLISLICRAVKATFNPAQDKCGIRLASVPGSQTVVVKEITIHTKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LTGNTLCAGGASDEKLISLICRAVKATFNPAQDKCGIRLASVPGSQTVVVKEITIHTKLP
              370       380       390       400       410       420

      390       400       410       420       430       440        
pF1KE2 AKDVYERLKDKWDELKEAGVSDMKLGDQGPPEEAEDRFSMPLIITIVCMASFLLLVAALY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AKDVYERLKDKWDELKEAGVSDMKLGDQGPPEEAEDRFSMPLIITIVCMASFLLLVAALY
              430       440       450       460       470       480

      450       460       470       480       490       500        
pF1KE2 GCCHQRLSQRKDQQRLTEELQTVENGYHDNPTLEVMETSSEMQEKKVVSLNGELGDSWIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GCCHQRLSQRKDQQRLTEELQTVENGYHDNPTLEVMETSSEMQEKKVVSLNGELGDSWIV
              490       500       510       520       530       540

      510       520      
pF1KE2 PLDNLTKDDLDEEEDTHL
       ::::::::::::::::::
CCDS34 PLDNLTKDDLDEEEDTHL
              550        




526 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:09:04 2016 done: Sun Nov  6 22:09:05 2016
 Total Scan time:  4.020 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]