FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2560, 209 aa
  1>>>pF1KE2560     209 - 209 aa - 209 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1404+/-0.000608; mu= 14.5000+/- 0.037
 mean_var=59.4128+/-11.692, 0's: 0 Z-trim(110.2): 7  B-trim: 0 in 0/51
 Lambda= 0.166393
 statistics sampled from 11617 (11620) to 11617 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.348), width:  16
 Scan time:  0.990

The best scores are:                                      opt bits E(33420)
CCDS1665.1 ADAM17 gene_id:6868|Hs109|chr2          ( 824) 1365 335.7 5.2e-92


>>CCDS1665.1 ADAM17 gene_id:6868|Hs109|chr2               (824 aa)
 initn: 1365 init1: 1365 opt: 1365  Z-score: 1765.5  bits: 335.7 E(33420): 5.2e-92
Smith-Waterman score: 1365; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KE2 MRQSLLFLTSVVPFVLAPRPPDDPGFGPHQRLEKLDSLLSDYDILSLSNIQQHSVRKRDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MRQSLLFLTSVVPFVLAPRPPDDPGFGPHQRLEKLDSLLSDYDILSLSNIQQHSVRKRDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QTSTHVETLLTFSALKRHFKLYLTSSTERFSQNFKVVVVDGKNESEYTVKWQDFFTGHVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QTSTHVETLLTFSALKRHFKLYLTSSTERFSQNFKVVVVDGKNESEYTVKWQDFFTGHVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GEPDSRVLAHIRDDDVIIRINTDGAEYNIEPLWRFVNDTKDKRMLVYKSEDIKNVSRLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GEPDSRVLAHIRDDDVIIRINTDGAEYNIEPLWRFVNDTKDKRMLVYKSEDIKNVSRLQS
              130       140       150       160       170       180

              190       200                                        
pF1KE2 PKVCGYLKVDNEELLPKGLVDREPPEGKT                               
       ::::::::::::::::::::::::::                                  
CCDS16 PKVCGYLKVDNEELLPKGLVDREPPEELVHRVKRRADPDPMKNTCKLLVVADHRFYRYMG
              190       200       210       220       230       240




209 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jul 16 16:01:02 2019 done: Tue Jul 16 16:01:02 2019
 Total Scan time:  0.990 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]