Result of FASTA (ccds) for
pF1KE2554
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2554, 361 aa
1>>>pF1KE2554 361 - 361 aa - 361 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8802+/-0.000841; mu= 15.1014+/- 0.051
mean_var=96.1537+/-18.887, 0's: 0 Z-trim(109.9): 114 B-trim: 294 in 1/50
Lambda= 0.130795
statistics sampled from 11130 (11251) to 11130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.346), width: 16
Scan time: 1.780
The best scores are: opt bits E(32554)
CCDS4804.1 PPARD gene_id:5467|Hs108|chr6 ( 361) 2426 467.8 6.6e-132
CCDS4803.1 PPARD gene_id:5467|Hs108|chr6 ( 441) 2412 465.2 4.8e-131
CCDS54994.1 PPARD gene_id:5467|Hs108|chr6 ( 402) 2129 411.7 5.3e-115
CCDS33669.1 PPARA gene_id:5465|Hs108|chr22 ( 468) 1466 286.7 2.7e-77
CCDS54995.1 PPARD gene_id:5467|Hs108|chr6 ( 343) 1417 277.3 1.3e-74
CCDS2610.2 PPARG gene_id:5468|Hs108|chr3 ( 477) 1342 263.3 3.1e-70
CCDS2609.1 PPARG gene_id:5468|Hs108|chr3 ( 505) 1342 263.3 3.2e-70
CCDS33718.1 NR1D2 gene_id:9975|Hs108|chr3 ( 579) 462 97.3 3.5e-20
CCDS11361.1 NR1D1 gene_id:9572|Hs108|chr17 ( 614) 449 94.9 2e-19
CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 392 84.0 2.7e-16
CCDS6646.1 RORB gene_id:6096|Hs108|chr9 ( 459) 391 83.8 3.1e-16
CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 389 83.4 3.5e-16
CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 389 83.4 4e-16
CCDS11366.1 RARA gene_id:5914|Hs108|chr17 ( 462) 387 83.1 5.3e-16
CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 ( 385) 384 82.5 6.8e-16
CCDS2642.1 RARB gene_id:5915|Hs108|chr3 ( 448) 381 81.9 1.1e-15
CCDS42317.1 RARA gene_id:5914|Hs108|chr17 ( 457) 381 81.9 1.2e-15
CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 ( 422) 380 81.7 1.2e-15
CCDS30856.1 RORC gene_id:6097|Hs108|chr1 ( 497) 377 81.2 2.1e-15
CCDS1004.1 RORC gene_id:6097|Hs108|chr1 ( 518) 377 81.2 2.1e-15
CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 ( 414) 374 80.6 2.7e-15
CCDS42593.1 NR1H2 gene_id:7376|Hs108|chr19 ( 460) 373 80.4 3.3e-15
CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 369 79.6 5e-15
CCDS45271.1 RORA gene_id:6095|Hs108|chr15 ( 468) 369 79.7 5.6e-15
CCDS10177.1 RORA gene_id:6095|Hs108|chr15 ( 523) 369 79.7 6.1e-15
CCDS10178.1 RORA gene_id:6095|Hs108|chr15 ( 548) 369 79.7 6.4e-15
CCDS10179.1 RORA gene_id:6095|Hs108|chr15 ( 556) 369 79.7 6.4e-15
CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 ( 423) 363 78.5 1.1e-14
CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 ( 533) 364 78.8 1.2e-14
CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 ( 537) 364 78.8 1.2e-14
CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 ( 462) 356 77.2 3.1e-14
CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 ( 463) 353 76.7 4.5e-14
CCDS73751.1 NR2E3 gene_id:10002|Hs108|chr15 ( 367) 350 76.0 5.6e-14
CCDS73750.1 NR2E3 gene_id:10002|Hs108|chr15 ( 410) 350 76.1 6.1e-14
CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 ( 340) 345 75.1 1e-13
CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 ( 598) 339 74.1 3.4e-13
CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 ( 611) 339 74.1 3.5e-13
CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 ( 652) 339 74.1 3.7e-13
CCDS6744.1 NR4A3 gene_id:8013|Hs108|chr9 ( 443) 334 73.1 5.3e-13
CCDS41821.1 NR2C1 gene_id:7181|Hs108|chr12 ( 467) 334 73.1 5.5e-13
CCDS44953.1 NR2C1 gene_id:7181|Hs108|chr12 ( 483) 334 73.1 5.6e-13
CCDS55340.1 NR6A1 gene_id:2649|Hs108|chr9 ( 475) 333 72.9 6.3e-13
CCDS65127.1 NR6A1 gene_id:2649|Hs108|chr9 ( 476) 333 72.9 6.3e-13
CCDS9051.1 NR2C1 gene_id:7181|Hs108|chr12 ( 603) 334 73.2 6.7e-13
CCDS6743.1 NR4A3 gene_id:8013|Hs108|chr9 ( 626) 334 73.2 6.9e-13
CCDS6742.1 NR4A3 gene_id:8013|Hs108|chr9 ( 637) 334 73.2 7e-13
CCDS2201.1 NR4A2 gene_id:4929|Hs108|chr2 ( 598) 333 73.0 7.6e-13
CCDS35137.1 NR6A1 gene_id:2649|Hs108|chr9 ( 480) 331 72.5 8.3e-13
CCDS6856.1 NR5A1 gene_id:2516|Hs108|chr9 ( 461) 325 71.4 1.8e-12
CCDS74905.1 NR2C2 gene_id:7182|Hs108|chr3 ( 596) 324 71.3 2.4e-12
>>CCDS4804.1 PPARD gene_id:5467|Hs108|chr6 (361 aa)
initn: 2426 init1: 2426 opt: 2426 Z-score: 2481.6 bits: 467.8 E(32554): 6.6e-132
Smith-Waterman score: 2426; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KE2 MEQPQEEAPEVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLLDQLQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MEQPQEEAPEVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLLDQLQM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 GCDGASCGSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GCDGASCGSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 NRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 HIYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 HIYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ISVHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ISVHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 DGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGG
310 320 330 340 350 360
pF1KE2 E
:
CCDS48 E
>>CCDS4803.1 PPARD gene_id:5467|Hs108|chr6 (441 aa)
initn: 2412 init1: 2412 opt: 2412 Z-score: 2466.1 bits: 465.2 E(32554): 4.8e-131
Smith-Waterman score: 2412; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)
10 20 30 40 50 60
pF1KE2 MEQPQEEAPEVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLLDQLQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MEQPQEEAPEVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLLDQLQM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 GCDGASCGSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GCDGASCGSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 NRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 HIYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 HIYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ISVHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ISVHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 DGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGD
310 320 330 340 350 360
pF1KE2 E
CCDS48 RPGLMNVPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRI
370 380 390 400 410 420
>>CCDS54994.1 PPARD gene_id:5467|Hs108|chr6 (402 aa)
initn: 2129 init1: 2129 opt: 2129 Z-score: 2178.1 bits: 411.7 E(32554): 5.3e-115
Smith-Waterman score: 2129; 100.0% identity (100.0% similar) in 316 aa overlap (44-359:5-320)
20 30 40 50 60 70
pF1KE2 EEEKEEVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLLDQLQMGCDGASCGSLNME
::::::::::::::::::::::::::::::
CCDS54 MHQRDLSRSSSPPSLLDQLQMGCDGASCGSLNME
10 20 30
80 90 100 110 120 130
pF1KE2 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKKNRNKCQYCRFQKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKKNRNKCQYCRFQKC
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE2 LALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSKHIYNAYLKNFNMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSKHIYNAYLKNFNMT
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE2 KKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTT
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE2 VETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVT
220 230 240 250 260 270
320 330 340 350 360
pF1KE2 REFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGGE
::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 REFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAI
280 290 300 310 320 330
CCDS54 QDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETETSLHPLL
340 350 360 370 380 390
>>CCDS33669.1 PPARA gene_id:5465|Hs108|chr22 (468 aa)
initn: 1446 init1: 841 opt: 1466 Z-score: 1501.0 bits: 286.7 E(32554): 2.7e-77
Smith-Waterman score: 1466; 68.6% identity (86.6% similar) in 322 aa overlap (40-359:66-386)
10 20 30 40 50 60
pF1KE2 EVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTD-LSRSSSPPSLLDQLQMGC-DGASC
: :: :: .::: :. . : : .
CCDS33 EISQSIGEDSSGSFGFTEYQYLGSCPGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPS
40 50 60 70 80 90
70 80 90 100 110 120
pF1KE2 GSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKKNRNKCQY
:.::.:::.:::::::.:::::::::::::::::::.:: :.::.:::::::::::::::
CCDS33 GALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQY
100 110 120 130 140 150
130 140 150 160 170 180
pF1KE2 CRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSKHIYNAYL
:::.:::..:::::::::::::..:: :: : . . : . . ..::::...:.::.:::
CCDS33 CRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYL
160 170 180 190 200 210
190 200 210 220 230 240
pF1KE2 KNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFY
:::::.: ::: ::.::::.. ::::::.::: .::: :: : ..::. :: :..:.
CCDS33 KNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN-KEAEVRIFH
220 230 240 250 260 270
250 260 270 280 290 300
pF1KE2 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVAN
::::.:::: :::::::.::.:..: ::::::::::::.:::::::.:..::::.:::
CCDS33 CCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAY
280 290 300 310 320 330
310 320 330 340 350 360
pF1KE2 GSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGGE
:.::.:::::.:::::: ::.::::.::.:::::::::::..::.:::: ::
CCDS33 GNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNV
340 350 360 370 380 390
CCDS33 GHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDA
400 410 420 430 440 450
>>CCDS54995.1 PPARD gene_id:5467|Hs108|chr6 (343 aa)
initn: 1417 init1: 1417 opt: 1417 Z-score: 1452.9 bits: 277.3 E(32554): 1.3e-74
Smith-Waterman score: 1487; 72.7% identity (72.7% similar) in 359 aa overlap (1-359:1-261)
10 20 30 40 50 60
pF1KE2 MEQPQEEAPEVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLLDQLQM
:::::::::::::::::::::::::::::::::::::::::::
CCDS54 MEQPQEEAPEVREEEEKEEVAEAEGAPELNGGPQHALPSSSYT-----------------
10 20 30 40
70 80 90 100 110 120
pF1KE2 GCDGASCGSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKK
CCDS54 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE2 NRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSK
:::::::::::::::::::::::::::::::::::::::
CCDS54 ---------------------AIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSK
50 60 70 80
190 200 210 220 230 240
pF1KE2 HIYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HIYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKE
90 100 110 120 130 140
250 260 270 280 290 300
pF1KE2 ISVHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ISVHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK
150 160 170 180 190 200
310 320 330 340 350 360
pF1KE2 DGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGD
210 220 230 240 250 260
pF1KE2 E
CCDS54 RPGLMNVPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRI
270 280 290 300 310 320
>>CCDS2610.2 PPARG gene_id:5468|Hs108|chr3 (477 aa)
initn: 1324 init1: 781 opt: 1342 Z-score: 1374.5 bits: 263.3 E(32554): 3.1e-70
Smith-Waterman score: 1342; 61.5% identity (86.3% similar) in 314 aa overlap (49-359:83-395)
20 30 40 50 60 70
pF1KE2 EVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLLDQLQMGC---DGASCGSLNMECR
.::: .. :. . : . . .:::
CCDS26 IPFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIECR
60 70 80 90 100 110
80 90 100 110 120 130
pF1KE2 VCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKKNRNKCQYCRFQKCLA
::::::::::::::::::::::::::::.:: :..:. .:.:.::.::::::::::::::
CCDS26 VCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCLA
120 130 140 150 160 170
140 150 160 170 180 190
pF1KE2 LGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSKHIYNAYLKNFNMTKK
.:::::::::::::.:::.::.: .... .: ::. :::.:..::.:..:.:.: .::
CCDS26 VGMSHNAIRFGRMPQAEKEKLLAEISSDI-DQLNPESADLRALAKHLYDSYIKSFPLTKA
180 190 200 210 220 230
200 210 220 230 240 250
pF1KE2 KARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVE
:::.:::::.. .::::.:...: ..: . .:... ::.....: :: .::
CCDS26 KARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVE
240 250 260 270 280 290
260 270 280 290 300 310
pF1KE2 TVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTRE
.:.:.::.:::::.: .: :::::::::::::: :..::::..::::.:...:.::.:::
CCDS26 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE
300 310 320 330 340 350
320 330 340 350 360
pF1KE2 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGGE
::.::::::.:..:::::::::::::::::::::.:::.::: :
CCDS26 FLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQD
360 370 380 390 400 410
CCDS26 NLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQE
420 430 440 450 460 470
>>CCDS2609.1 PPARG gene_id:5468|Hs108|chr3 (505 aa)
initn: 1324 init1: 781 opt: 1342 Z-score: 1374.1 bits: 263.3 E(32554): 3.2e-70
Smith-Waterman score: 1342; 61.5% identity (86.3% similar) in 314 aa overlap (49-359:111-423)
20 30 40 50 60 70
pF1KE2 EVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLLDQLQMGC---DGASCGSLNMECR
.::: .. :. . : . . .:::
CCDS26 IPFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIECR
90 100 110 120 130 140
80 90 100 110 120 130
pF1KE2 VCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKKNRNKCQYCRFQKCLA
::::::::::::::::::::::::::::.:: :..:. .:.:.::.::::::::::::::
CCDS26 VCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCLA
150 160 170 180 190 200
140 150 160 170 180 190
pF1KE2 LGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSKHIYNAYLKNFNMTKK
.:::::::::::::.:::.::.: .... .: ::. :::.:..::.:..:.:.: .::
CCDS26 VGMSHNAIRFGRMPQAEKEKLLAEISSDI-DQLNPESADLRALAKHLYDSYIKSFPLTKA
210 220 230 240 250
200 210 220 230 240 250
pF1KE2 KARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVE
:::.:::::.. .::::.:...: ..: . .:... ::.....: :: .::
CCDS26 KARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVE
260 270 280 290 300 310
260 270 280 290 300 310
pF1KE2 TVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTRE
.:.:.::.:::::.: .: :::::::::::::: :..::::..::::.:...:.::.:::
CCDS26 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE
320 330 340 350 360 370
320 330 340 350 360
pF1KE2 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGGE
::.::::::.:..:::::::::::::::::::::.:::.::: :
CCDS26 FLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQD
380 390 400 410 420 430
CCDS26 NLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQE
440 450 460 470 480 490
>>CCDS33718.1 NR1D2 gene_id:9975|Hs108|chr3 (579 aa)
initn: 589 init1: 228 opt: 462 Z-score: 475.9 bits: 97.3 E(32554): 3.5e-20
Smith-Waterman score: 462; 45.8% identity (73.6% similar) in 144 aa overlap (46-187:79-212)
20 30 40 50 60 70
pF1KE2 EKEEVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLLDQLQMGCDGASCGSLNMECR
:.::.: . . . : : .. . :.
CCDS33 SDTNGNPKNGDLANIEGILKNDRIDCSMKTSKSSAPG--MTKSHSGVTKFS--GMVLLCK
50 60 70 80 90 100
80 90 100 110 120 130
pF1KE2 VCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKC
:::: ::::::::::::::::::::.:.....:.:: .. :.:.. :::.:: :::.::
CCDS33 VCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKC
110 120 130 140 150 160
140 150 160 170 180 190
pF1KE2 LALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSKHIYNAYLKNFNMT
:..:::..:.::::.:. ::.... . . ...: : :: :. : :
CCDS33 LSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQ------FSGHLQNDTLVEHHEQ
170 180 190 200 210
200 210 220 230 240 250
pF1KE2 KKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTT
CCDS33 TALPAQEQLRPKPQLEQENIKSSSPPSSDFAKEEVIGMVTRAHKDTFMYNQEQQENSAES
220 230 240 250 260 270
>>CCDS11361.1 NR1D1 gene_id:9572|Hs108|chr17 (614 aa)
initn: 573 init1: 241 opt: 449 Z-score: 462.3 bits: 94.9 E(32554): 2e-19
Smith-Waterman score: 455; 46.1% identity (78.0% similar) in 141 aa overlap (30-158:78-218)
10 20 30 40 50
pF1KE2 MEQPQEEAPEVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLL----
.:.:. . ::: .. ..:::. :
CCDS11 CPTYFPPSPTGSLTQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAM
50 60 70 80 90 100
60 70 80 90 100
pF1KE2 -DQLQMGCDGASCG--SLN---MECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYE
:. ... . .. . .:: . :.:::: ::::::::::::::::::::.:.....:.
CCDS11 EDSSRVSPSKSTSNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYK
110 120 130 140 150 160
110 120 130 140 150 160
pF1KE2 KCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQ
.: .. :.: . :::.:: :::.:::..:::..:.::::.:. ::....:
CCDS11 RCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLA
170 180 190 200 210 220
170 180 190 200 210 220
pF1KE2 YNPQVADLKAFSKHIYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLV
CCDS11 NNQLSSQCPLETSPTQHPTPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVED
230 240 250 260 270 280
>>CCDS8850.1 RARG gene_id:5916|Hs108|chr12 (454 aa)
initn: 463 init1: 179 opt: 392 Z-score: 406.0 bits: 84.0 E(32554): 2.7e-16
Smith-Waterman score: 465; 28.7% identity (59.2% similar) in 338 aa overlap (26-359:43-339)
10 20 30 40 50
pF1KE2 MEQPQEEAPEVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLL
.: . : : ::. ...:: .. :
CCDS88 ALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKE-MASLSVETQSTSSE
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE2 DQLQMGCDGASCGSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCER--
... . . . : ::.::.::.:::: .::::::::::.:. .. : :.:
CCDS88 EMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYT-CHRDK
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE2 SCKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVA
.: :.: .::.:::::.:::. .:::..:.: : .:.: : . .. . .::.
CCDS88 NCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR---NKKKKEVKEEGSPDSYELSPQLE
140 150 160 170 180
180 190 200 210 220 230
pF1KE2 DLKAFSKHIYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVN
.: ..: . .:. ..: . .. ...:.: . : . :: : .
CCDS88 EL--ITK-VSKAHQETFPSLCQLGKYTTNSSADHRV-----------QLDLGL-WDK---
190 200 210 220
240 250 260 270 280 290
pF1KE2 GLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAM
..:... .: . ...:::: .:.:..: . ::.:::: . . ..
CCDS88 ----FSELAT----KC-------IIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLR
230 240 250 260 270
300 310 320 330 340 350
pF1KE2 LAS--IVNKDGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALF
. . ..: . ..: . .. . :..:.. : :: .. ::.::.. .:.
CCDS88 ICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLV---FAFAGQLLPLEMDDTETGLL
280 290 300 310 320 330
360
pF1KE2 IAAIILCGGE
: ..::
CCDS88 SAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGIST
340 350 360 370 380 390
361 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:48:47 2016 done: Tue Nov 8 10:48:48 2016
Total Scan time: 1.780 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]