FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2552, 167 aa
  1>>>pF1KE2552 167 - 167 aa - 167 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1094+/-0.00098; mu= 13.0961+/- 0.059
 mean_var=64.5602+/-12.889, 0's: 0 Z-trim(104.2): 76  B-trim: 37 in 1/47
 Lambda= 0.159622
 statistics sampled from 7693 (7769) to 7693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.239), width:  16
 Scan time:  1.050

The best scores are:                                      opt bits E(32554)
CCDS8603.1 CLECL1 gene_id:160365|Hs108|chr12       ( 167) 1113 264.9 1.6e-71
CCDS73441.1 CLECL1 gene_id:160365|Hs108|chr12      ( 191) 1082 257.8 2.5e-69


>>CCDS8603.1 CLECL1 gene_id:160365|Hs108|chr12            (167 aa)
 initn: 1113 init1: 1113 opt: 1113  Z-score: 1397.5  bits: 264.9 E(32554): 1.6e-71
Smith-Waterman score: 1113; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)

               10        20        30        40        50        60
pF1KE2 MVSNFFHVIQVFEKSATLISKTEHIGFVIYSWRKSTTHLGSRRKFAISIYLSEVSLQKYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MVSNFFHVIQVFEKSATLISKTEHIGFVIYSWRKSTTHLGSRRKFAISIYLSEVSLQKYD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 CPFSGTSFVVFSLFLICAMAGDVVYADIKTVRTSPLELAFPLQRSVSFNFSTVHKSCPAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 CPFSGTSFVVFSLFLICAMAGDVVYADIKTVRTSPLELAFPLQRSVSFNFSTVHKSCPAK
               70        80        90       100       110       120

              130       140       150       160       
pF1KE2 DWKVHKGKCYWIAETKKSWNKSQNDCAINNSYLMVIQDITAMVRFNI
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 DWKVHKGKCYWIAETKKSWNKSQNDCAINNSYLMVIQDITAMVRFNI
              130       140       150       160       

>>CCDS73441.1 CLECL1 gene_id:160365|Hs108|chr12           (191 aa)
 initn: 1117 init1: 1082 opt: 1082  Z-score: 1358.1  bits: 257.8 E(32554): 2.5e-69
Smith-Waterman score: 1082; 99.4% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE2 MVSNFFHVIQVFEKSATLISKTEHIGFVIYSWRKSTTHLGSRRKFAISIYLSEVSLQKYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MVSNFFHVIQVFEKSATLISKTEHIGFVIYSWRKSTTHLGSRRKFAISIYLSEVSLQKYD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 CPFSGTSFVVFSLFLICAMAGDVVYADIKTVRTSPLELAFPLQRSVSFNFSTVHKSCPAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CPFSGTSFVVFSLFLICAMAGDVVYADIKTVRTSPLELAFPLQRSVSFNFSTVHKSCPAK
               70        80        90       100       110       120

              130       140       150       160                    
pF1KE2 DWKVHKGKCYWIAETKKSWNKSQNDCAINNSYLMVIQDITAMVRFNI             
       ::::::::::::::::::::::::::::::::::::::::::.                 
CCDS73 DWKVHKGKCYWIAETKKSWNKSQNDCAINNSYLMVIQDITAMLITFLLYLQMAFLQCVYI
              130       140       150       160       170       180

CCDS73 SDVSVYPNFFL
              190 




167 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 02:17:16 2016 done: Tue Nov  8 02:17:16 2016
 Total Scan time:  1.050 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]