FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2536, 123 aa
  1>>>pF1KE2536 123 - 123 aa - 123 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8499+/-0.000266; mu= 13.1526+/- 0.017
 mean_var=60.1528+/-11.809, 0's: 0 Z-trim(119.9): 44  B-trim: 0 in 0/58
 Lambda= 0.165366
 statistics sampled from 34535 (34579) to 34535 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.405), width:  16
 Scan time:  3.910

The best scores are:                                      opt bits E(85289)
NP_777377 (OMIM: 609737) protein crumbs homolog 3  ( 123)  777 192.7 1.3e-49
XP_016882960 (OMIM: 609737) PREDICTED: protein cru ( 186)  777 192.8 1.8e-49
NP_777378 (OMIM: 609737) protein crumbs homolog 3  ( 120)  624 156.2 1.2e-38
NP_631900 (OMIM: 609737) protein crumbs homolog 3  ( 120)  624 156.2 1.2e-38


>>NP_777377 (OMIM: 609737) protein crumbs homolog 3 isof  (123 aa)
 initn: 777 init1: 777 opt: 777  Z-score: 1011.8  bits: 192.7 E(85289): 1.3e-49
Smith-Waterman score: 777; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KE2 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQGC
               70        80        90       100       110       120

          
pF1KE2 LPI
       :::
NP_777 LPI
          

>>XP_016882960 (OMIM: 609737) PREDICTED: protein crumbs   (186 aa)
 initn: 777 init1: 777 opt: 777  Z-score: 1009.2  bits: 192.8 E(85289): 1.8e-49
Smith-Waterman score: 777; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:64-186)

                                             10        20        30
pF1KE2                               MANPGLGLLLALGLPFLLARWGRAWGQIQT
                                     ::::::::::::::::::::::::::::::
XP_016 PVAGAPGRRCGRRGEREKPLPRRCQPATQPMANPGLGLLLALGLPFLLARWGRAWGQIQT
            40        50        60        70        80        90   

               40        50        60        70        80        90
pF1KE2 TSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQTE
           100       110       120       130       140       150   

              100       110       120   
pF1KE2 GTYRPSSEEQFSHAAEARAPQDSKETVQGCLPI
       :::::::::::::::::::::::::::::::::
XP_016 GTYRPSSEEQFSHAAEARAPQDSKETVQGCLPI
           160       170       180      

>>NP_777378 (OMIM: 609737) protein crumbs homolog 3 isof  (120 aa)
 initn: 621 init1: 621 opt: 624  Z-score: 814.7  bits: 156.2 E(85289): 1.2e-38
Smith-Waterman score: 624; 93.6% identity (95.5% similar) in 110 aa overlap (1-110:1-106)

               10        20        30        40        50        60
pF1KE2 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQGC
       :::::::::::::::::::::::::::::::::::::::: .    ::.:          
NP_777 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQVG----ARVPPTPNLKLPPE
               70        80        90       100           110      

           
pF1KE2 LPI 
           
NP_777 ERLI
        120

>>NP_631900 (OMIM: 609737) protein crumbs homolog 3 isof  (120 aa)
 initn: 621 init1: 621 opt: 624  Z-score: 814.7  bits: 156.2 E(85289): 1.2e-38
Smith-Waterman score: 624; 93.6% identity (95.5% similar) in 110 aa overlap (1-110:1-106)

               10        20        30        40        50        60
pF1KE2 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQGC
       :::::::::::::::::::::::::::::::::::::::: .    ::.:          
NP_631 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQVG----ARVPPTPNLKLPPE
               70        80        90       100           110      

           
pF1KE2 LPI 
           
NP_631 ERLI
        120




123 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:33:54 2016 done: Tue Nov  8 03:33:55 2016
 Total Scan time:  3.910 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]