FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2536, 123 aa
  1>>>pF1KE2536 123 - 123 aa - 123 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6674+/-0.000574; mu= 14.3401+/- 0.035
 mean_var=62.0237+/-12.136, 0's: 0 Z-trim(113.1): 17  B-trim: 0 in 0/51
 Lambda= 0.162853
 statistics sampled from 13718 (13734) to 13718 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.422), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS12166.1 CRB3 gene_id:92359|Hs108|chr19         ( 123)  777 189.9 3.4e-49
CCDS12167.1 CRB3 gene_id:92359|Hs108|chr19         ( 120)  624 153.9 2.2e-38


>>CCDS12166.1 CRB3 gene_id:92359|Hs108|chr19              (123 aa)
 initn: 777 init1: 777 opt: 777  Z-score: 996.6  bits: 189.9 E(32554): 3.4e-49
Smith-Waterman score: 777; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KE2 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQGC
               70        80        90       100       110       120

          
pF1KE2 LPI
       :::
CCDS12 LPI
          

>>CCDS12167.1 CRB3 gene_id:92359|Hs108|chr19              (120 aa)
 initn: 621 init1: 621 opt: 624  Z-score: 802.5  bits: 153.9 E(32554): 2.2e-38
Smith-Waterman score: 624; 93.6% identity (95.5% similar) in 110 aa overlap (1-110:1-106)

               10        20        30        40        50        60
pF1KE2 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQGC
       :::::::::::::::::::::::::::::::::::::::: .    ::.:          
CCDS12 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQVG----ARVPPTPNLKLPPE
               70        80        90       100           110      

           
pF1KE2 LPI 
           
CCDS12 ERLI
        120




123 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:33:54 2016 done: Tue Nov  8 03:33:54 2016
 Total Scan time:  1.590 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]