FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2521, 551 aa
  1>>>pF1KE2521 551 - 551 aa - 551 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2384+/-0.000943; mu= 1.7241+/- 0.057
 mean_var=211.6840+/-43.621, 0's: 0 Z-trim(111.9): 24  B-trim: 108 in 1/53
 Lambda= 0.088152
 statistics sampled from 12737 (12753) to 12737 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.392), width:  16
 Scan time:  3.880

The best scores are:                                      opt bits E(32554)
CCDS758.1 PALMD gene_id:54873|Hs108|chr1           ( 551) 3616 472.6 5.2e-133
CCDS48002.2 PALM2 gene_id:114299|Hs108|chr9        ( 411)  581 86.6 6.4e-17


>>CCDS758.1 PALMD gene_id:54873|Hs108|chr1                (551 aa)
 initn: 3616 init1: 3616 opt: 3616  Z-score: 2501.4  bits: 472.6 E(32554): 5.2e-133
Smith-Waterman score: 3616; 100.0% identity (100.0% similar) in 551 aa overlap (1-551:1-551)

               10        20        30        40        50        60
pF1KE2 MEEAELVKGRLQAITDKRKIQEEISQKRLKIEEDKLKHQHLKKKALREKWLLDGISSGKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MEEAELVKGRLQAITDKRKIQEEISQKRLKIEEDKLKHQHLKKKALREKWLLDGISSGKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QEEMKKQNQQDQHQIQVLEQSILRLEKEIQDLEKAELQISTKEEAILKKLKSIERTTEDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QEEMKKQNQQDQHQIQVLEQSILRLEKEIQDLEKAELQISTKEEAILKKLKSIERTTEDI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 IRSVKVEREERAEESIEDIYANIPDLPKSYIPSRLRKEINEEKEDDEQNRKALYAMEIKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IRSVKVEREERAEESIEDIYANIPDLPKSYIPSRLRKEINEEKEDDEQNRKALYAMEIKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 EKDLKTGESTVLSSIPLPSDDFKGTGIKVYDDGQKSVYAVSSNHSAAYNGTDGLAPVEVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKDLKTGESTVLSSIPLPSDDFKGTGIKVYDDGQKSVYAVSSNHSAAYNGTDGLAPVEVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ELLRQASERNSKSPTEYHEPVYANPFYRPTTPQRETVTPGPNFQERIKIKTNGLGIGVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ELLRQASERNSKSPTEYHEPVYANPFYRPTTPQRETVTPGPNFQERIKIKTNGLGIGVNE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 SIHNMGNGLSEERGNNFNHISPIPPVPHPRSVIQQAEEKLHTPQKRLMTPWEESNVMQDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SIHNMGNGLSEERGNNFNHISPIPPVPHPRSVIQQAEEKLHTPQKRLMTPWEESNVMQDK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 DAPSPKPRLSPRETIFGKSEHQNSSPTCQEDEEDVRYNIVHSLPPDINDTEPVTMIFMGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DAPSPKPRLSPRETIFGKSEHQNSSPTCQEDEEDVRYNIVHSLPPDINDTEPVTMIFMGY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 QQAEDSEEDKKFLTGYDGIIHAELVVIDDEEEEDEGEAEKPSYHPIAPHSQVYQPAKPTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QQAEDSEEDKKFLTGYDGIIHAELVVIDDEEEEDEGEAEKPSYHPIAPHSQVYQPAKPTP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 LPRKRSEASPHENTNHKSPHKNSISLKEQEESLGSPVHHSPFDAQTTGDGTEDPSLTALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LPRKRSEASPHENTNHKSPHKNSISLKEQEESLGSPVHHSPFDAQTTGDGTEDPSLTALR
              490       500       510       520       530       540

              550 
pF1KE2 MRMAKLGKKVI
       :::::::::::
CCDS75 MRMAKLGKKVI
              550 

>>CCDS48002.2 PALM2 gene_id:114299|Hs108|chr9             (411 aa)
 initn: 666 init1: 232 opt: 581  Z-score: 417.2  bits: 86.6 E(32554): 6.4e-17
Smith-Waterman score: 614; 32.6% identity (53.8% similar) in 513 aa overlap (1-497:1-402)

               10        20        30        40        50          
pF1KE2 MEEAELVKGRLQAITDKRKIQEEISQKRLKIEEDKLKHQHLKKKALREKWLLDGISSG--
       : :::: : :::::..::: : ::  :: ...:. :  :: :.:.:::::::.:: .:  
CCDS48 MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIPAGTA
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE2 KEQEEMKKQNQQDQHQIQVLEQSILRLEKEIQDLEKAELQISTKEEAILKKLKSIERTTE
       .:.:  ..:...:. ... ::..: :::.::: ::. : :::.::. ::.:::  :.. .
CCDS48 EEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQISAKEQIILEKLKETEKSFK
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KE2 DIIRSVKVEREERAEESIEDIYANIPDLPKSYIPSRLRKEINEEKEDDEQNRKALYAMEI
       :. .. .        .... : ...::::   . ::  .      .:  .   :.:::::
CCDS48 DFQKGFS----STDGDAVNYISSQLPDLP--ILCSRTAEP--SPGQDGTSRAAAVYAMEI
                  130       140         150         160       170  

      180       190       200       210       220       230        
pF1KE2 KVEKDLKTGESTVLSSIPLPSDDFKGTGIKVYDDGQKSVYAVSSNHSAAYNGTDGLAPVE
       .:::: .:::. .::.  .  .  .  :.:::::: : :: : :. ... ::.  :.  .
CCDS48 NVEKDKQTGETKILSTSTIGPEGVHQKGVKVYDDGTKVVYEVRSGGTVVENGVHKLSTKD
            180       190       200       210       220       230  

      240       250       260       270       280       290        
pF1KE2 VEELLRQASERNSKSPTEYHEPVYANPFYRPTTPQRETVTPGPNFQERIKIKTNGLGIGV
       ::::...:.. .                             : . .::  :  ..:.   
CCDS48 VEELIQKAGQSS---------------------------LGGGHVSERTVIADGSLS---
            240                                  250       260     

      300       310       320       330       340       350        
pF1KE2 NESIHNMGNGLSEERGNNFNHISPIPPVPHPRSVIQQAEEKLHTPQKRLMTPWEESNVMQ
                                    ::.  .   : ::.  .:            .
CCDS48 -----------------------------HPKEHMLCKEAKLEMVHK------------S
                                         270       280             

      360       370       380       390       400       410        
pF1KE2 DKDAPSPKPRLSPRETIFGKSEHQNSSPTCQEDEEDVRYNIVHSLPPDINDTEPVTMIFM
        ::  : .:         :.   : ..:.              .  :. :  .:::::::
CCDS48 RKDHSSGNP---------GQ---QAQAPS--------------AAGPEANLDQPVTMIFM
             290                                 300       310     

      420       430       440       450                    460     
pF1KE2 GYQQAEDSEEDKKFLTGYDGIIHAELVVIDDEEEE-------------DEGEAEKPSYHP
       :::. :: :: :: : :::  :.::::.::...:.             : . ::  : .:
CCDS48 GYQNIEDEEETKKVL-GYDETIKAELVLIDEDDEKSLREKTVTDVSTIDGNAAELVSGRP
         320       330        340       350       360       370    

         470       480        490       500       510       520    
pF1KE2 IAPHSQVYQPAKPTPLPRKRSEAS-PHENTNHKSPHKNSISLKEQEESLGSPVHHSPFDA
       .   :.. .:..:    ...: :. :  .:..:                           
CCDS48 V---SDTTEPSSPE--GKEESLATEPAPGTQKKKRCQCCVVM                  
             380         390       400       410                   

          530       540       550 
pF1KE2 QTTGDGTEDPSLTALRMRMAKLGKKVI




551 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:20:11 2016 done: Tue Nov  8 03:20:11 2016
 Total Scan time:  3.880 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]